PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g08360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 271aa MW: 30397.3 Da PI: 9.063 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.8 | 1.9e-11 | 87 | 138 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w+++ Vang03g08360.1 87 KQKWTAEEEAALKAGVIKHGVGKWRTILKDPEfnnvlYLRSNVDLKDKWRNL 138 79***********************************88***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.21E-16 | 84 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-7 | 86 | 141 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-13 | 86 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-8 | 87 | 138 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.375 | 87 | 139 | IPR017877 | Myb-like domain |
CDD | cd11660 | 2.03E-20 | 88 | 138 | No hit | No description |
SMART | SM00526 | 6.8E-8 | 191 | 256 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 20.602 | 193 | 270 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 9.8E-13 | 194 | 254 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.2E-11 | 196 | 254 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 7.9E-8 | 197 | 254 | IPR005818 | Linker histone H1/H5, domain H15 |
CDD | cd00073 | 1.38E-10 | 200 | 253 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
LSYFLFVVYR YRIHLLNAQV GSLFLLGHLA RDAIETGDLR SPISHLSNLH QIVSSLFQLR 60 AKVDAYVVYI CLPAESASDK LVMGAPKQKW TAEEEAALKA GVIKHGVGKW RTILKDPEFN 120 NVLYLRSNVD LKDKWRNLSV MANGWSSREK SRLAVRRVHH TPKQDEHSMS ITPVAPSDED 180 IVDHDCICFT LFTLYSLDKL IMEAITSLKE NGGSNKTAIA AFIEDQYWAL PDLKRMLSAK 240 LKFLTASGKL IKVSPCLGDY SEFLGLKMSL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00607 | ChIP-seq | Transfer from AT1G49950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g08360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-119 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017436792.1 | 1e-109 | PREDICTED: telomere repeat-binding factor 1 | ||||
Swissprot | Q8VWK4 | 9e-75 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A4D6KUK1 | 1e-147 | A0A4D6KUK1_VIGUN; Myb proto-oncogene protein | ||||
STRING | XP_007147427.1 | 1e-108 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 4e-77 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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