 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Vang03g06800.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
Trihelix |
| Protein Properties |
Length: 337aa MW: 38336.4 Da PI: 5.1768 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang03g06800.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 47 | 6.9e-15 | 21 | 112 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
+W+++ +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + ss++p++++l+a
Vang03g06800.1 21 CWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGTLSSSWPFYERLDA 112
7****************************************99999****************************99999999*******985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MPDFNDSIAP PSRPVPVRED CWSEEASSTL VDAWGRRYLE LNRGNLRQKD WQDVADAVNA 60
LHGHTKKTHR TDVQCKNRID TIKKKYKIEK ARVSSSNGTL SSSWPFYERL DALIGPNFNA 120
KKPPSSSPSP SPPVALPLLP HRKNPSSSPA IAVTPTAVAL PQKRSAAAAA MDEGYFRRNY 180
SAVAAAAAAA EADEDEEEEE EEEADDVEEE EDEDEGRGSE VEEGEKEREG MRRLAKAIER 240
FGEVYERVEG QKLRQMVDLE KQRMQFAKDL EVQRMQMFMD TQVQLERIKR GKRSGSNGTT 300
HYVLEERRRT VSYWFGSRNI HKNQDSEENG KDSFDYR
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G58630.1 | 1e-41 | sequence-specific DNA binding transcription factors |
