PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g06500.1
Common NameLR48_Vigan09g238200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 364aa    MW: 39358.2 Da    PI: 8.399
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g06500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33.1e-0946842357
                    SS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox 23 rypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Vang03g06500.1 46 VNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 84
                    6899********************************995 PP
2Wus_type_Homeobox75.48.4e-2541852064
  Wus_type_Homeobox 20 yksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       y+sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
     Vang03g06500.1 41 YTSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 85
                       99*****************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000860.00763785No hitNo description
PfamPF000469.1E-74684IPR001356Homeobox domain
SuperFamilySSF466898.29E-64789IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNPH HQWQHDINSS LISTGCHRSP YTSGMVNPPR DEIRKIRAQL  60
QEYGQVGDAN VFYWFQNRKS RSKHKLRHLQ NMKNQNLEAQ QNPTSLPQIT APSSSSSSSE  120
KSSPKELIPT KVFSIGFSNV TDVVPNSPTT SVNQTYFQTH NESSMLPPPP AAAAAQTGGF  180
FFPVQHHGQG VPPSTVASQG FCFSELSNVV QLQSPPQHNV GPCTSLLLSE IVGHGGAASK  240
KDLEQDKSLK IMHHQPSLFN FCVTPTTTAP TTASAVPPIT TSTTTVLSPV IAQVQGMADP  300
AAAARSTVFI NDVAFEVAVG PFNVREAFGD DAVLIHATGQ PVLTNQWGVT LHSLQHGACY  360
YLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g06500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435582.10.0PREDICTED: WUSCHEL-related homeobox 9
TrEMBLA0A0L9VFE30.0A0A0L9VFE3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S2S50.0A0A0S3S2S5_PHAAN; Uncharacterized protein
STRINGXP_007148089.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-40homeobox-3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]