PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang03g06500.1 | ||||||||
Common Name | LR48_Vigan09g238200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 364aa MW: 39358.2 Da PI: 8.399 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 3.1e-09 | 46 | 84 | 23 | 57 |
SS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 23 rypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Vang03g06500.1 46 VNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 84 6899********************************995 PP | |||||||
2 | Wus_type_Homeobox | 75.4 | 8.4e-25 | 41 | 85 | 20 | 64 |
Wus_type_Homeobox 20 yksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 y+sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k Vang03g06500.1 41 YTSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 85 99*****************************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 0.0076 | 37 | 85 | No hit | No description |
Pfam | PF00046 | 9.1E-7 | 46 | 84 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.29E-6 | 47 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCNPH HQWQHDINSS LISTGCHRSP YTSGMVNPPR DEIRKIRAQL 60 QEYGQVGDAN VFYWFQNRKS RSKHKLRHLQ NMKNQNLEAQ QNPTSLPQIT APSSSSSSSE 120 KSSPKELIPT KVFSIGFSNV TDVVPNSPTT SVNQTYFQTH NESSMLPPPP AAAAAQTGGF 180 FFPVQHHGQG VPPSTVASQG FCFSELSNVV QLQSPPQHNV GPCTSLLLSE IVGHGGAASK 240 KDLEQDKSLK IMHHQPSLFN FCVTPTTTAP TTASAVPPIT TSTTTVLSPV IAQVQGMADP 300 AAAARSTVFI NDVAFEVAVG PFNVREAFGD DAVLIHATGQ PVLTNQWGVT LHSLQHGACY 360 YLI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang03g06500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435582.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 9 | ||||
TrEMBL | A0A0L9VFE3 | 0.0 | A0A0L9VFE3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S2S5 | 0.0 | A0A0S3S2S5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148089.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3824 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33880.1 | 4e-40 | homeobox-3 |
Publications ? help Back to Top | |||
---|---|---|---|
|