![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang03g06040.1 | ||||||||
Common Name | LR48_Vigan09g242400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 308aa MW: 32793.1 Da PI: 8.9711 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.7 | 1.2e-38 | 35 | 95 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ Vang03g06040.1 35 PQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAK 95 67899***************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 5.1E-33 | 37 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.835 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-24 | 40 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 308 aa Download sequence Send to blast |
MEQGGGEGGD MNKLPQDSSM KEMQQGDAQP QVQAPQQPQK CPRCDSLNTK FCYYNNYSLS 60 QPRYFCKTCR RYWTQGGTLR NVPVGGGCRK GKRAKSSNPS SSENSSSRSL PQQQQSQDVV 120 VQTQPPPLTT VVRAKDPSSV LASPLYQSGG YLSSLAAMHS LNPSSHPFDQ SLNSDALRSS 180 NLGLLSGFNV QRPIGSIGTI RPAQLYQMGS GQREVASLYD QGLVNPSSSM ANTNTNSSGV 240 SHHDWPQIFI SNNTNAGNRA SDASLWSTIS TTIGGNSERT GAGAGTVSGS SLVQNQWPDI 300 PGYGPPP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang03g06040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435094.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.1-like | ||||
TrEMBL | A0A0L9VFD6 | 0.0 | A0A0L9VFD6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S2P6 | 0.0 | A0A0S3S2P6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148146.1 | 1e-164 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60200.1 | 2e-32 | TARGET OF MONOPTEROS 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|