PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g05720.1
Common NameLR48_Vigan09g246900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 279aa    MW: 30885.3 Da    PI: 8.386
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g05720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof113.31e-3542101261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     +++ l+cprCds ntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++++
  Vang03g05720.1  42 PSEPLNCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAK 101
                     67889************************************************8777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-212994IPR003851Zinc finger, Dof-type
PfamPF027011.4E-314599IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.29846100IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104884IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGLSSKQVSN RGLDWDQTLL QAQNLELPKP TPMRKQQQQT QPSEPLNCPR CDSINTKFCY  60
YNNYNKSQPR HFCRACKRHW TKGGTLRNVP VGGGRKNKRA KKSTTATTTT SNGSMDGELR  120
TRVTIPPLAV DDHHKTTPSS LYQSLCLPQQ NPNTKVSQGK DFGIGNGIFL SSNVPFPQNQ  180
SLLFPFTTSN SFDTNTCAVS NSLQSSSVYN YGDEFKILEE PTVNSTMACT GAGTRTQPWE  240
IAATSSGLEM SNYWSWEDID SLVSTDPNNP WDDSDIKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g05720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434918.10.0PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBLA0A0L9VFH90.0A0A0L9VFH9_PHAAN; Uncharacterized protein
STRINGXP_007148198.11e-172(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.19e-28DOF zinc finger protein 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]