PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g05720.1

Common Name

LR48_Vigan09g246900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 279aa MW: 30885.3 Da PI: 8.386

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g05720.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.3	1e-35	42	101	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ l+cprCds ntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++++ Vang03g05720.1 42 PSEPLNCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAK 101 67889************************************************8777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-21	29	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-31	45	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.298	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGLSSKQVSN RGLDWDQTLL QAQNLELPKP TPMRKQQQQT QPSEPLNCPR CDSINTKFCY 60 YNNYNKSQPR HFCRACKRHW TKGGTLRNVP VGGGRKNKRA KKSTTATTTT SNGSMDGELR 120 TRVTIPPLAV DDHHKTTPSS LYQSLCLPQQ NPNTKVSQGK DFGIGNGIFL SSNVPFPQNQ 180 SLLFPFTTSN SFDTNTCAVS NSLQSSSVYN YGDEFKILEE PTVNSTMACT GAGTRTQPWE 240 IAATSSGLEM SNYWSWEDID SLVSTDPNNP WDDSDIKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g05720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017434918.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBL	A0A0L9VFH9	0.0	A0A0L9VFH9_PHAAN; Uncharacterized protein
STRING	XP_007148198.1	1e-172	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	9e-28	DOF zinc finger protein 1

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]