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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g05720.1 | ||||||||
Common Name | LR48_Vigan09g246900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 279aa MW: 30885.3 Da PI: 8.386 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 113.3 | 1e-35 | 42 | 101 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ l+cprCds ntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++++ Vang03g05720.1 42 PSEPLNCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAK 101 67889************************************************8777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-21 | 29 | 94 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-31 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.298 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGLSSKQVSN RGLDWDQTLL QAQNLELPKP TPMRKQQQQT QPSEPLNCPR CDSINTKFCY 60 YNNYNKSQPR HFCRACKRHW TKGGTLRNVP VGGGRKNKRA KKSTTATTTT SNGSMDGELR 120 TRVTIPPLAV DDHHKTTPSS LYQSLCLPQQ NPNTKVSQGK DFGIGNGIFL SSNVPFPQNQ 180 SLLFPFTTSN SFDTNTCAVS NSLQSSSVYN YGDEFKILEE PTVNSTMACT GAGTRTQPWE 240 IAATSSGLEM SNYWSWEDID SLVSTDPNNP WDDSDIKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g05720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434918.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
TrEMBL | A0A0L9VFH9 | 0.0 | A0A0L9VFH9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148198.1 | 1e-172 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5107 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 9e-28 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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