PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g04780.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 1313aa    MW: 147066 Da    PI: 9.0057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g04780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12219266355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L +Av+Y+k+Lq
  Vang03g04780.1 219 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGEAVKYLKQLQ 266
                     5799************************.....9******************9 PP
2HLH38.32.4e-1211371184355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH    3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55  
                      + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L +Av+Y+k+Lq
  Vang03g04780.1 1137 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGEAVKYLKQLQ 1184
                      5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.304216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-10220266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-17220278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16220281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.75E-12221270No hitNo description
SMARTSM003538.9E-15222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.30411341183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-1011381184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1611381199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-1711381196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.75E-1211391188No hitNo description
SMARTSM003538.9E-1511401189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0005783Cellular Componentendoplasmic reticulum
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1313 aa     Download sequence    Send to blast
MRDHKTRNHP WICEAIIKKF QCLVGEEHCQ SPQNNNRWRI FSSAVFHCMR SFHMEISSIR  60
GLPELGIIED PNFLHQWQLN PTDTSSLTGA AFGESLQKLS FSGNSNFNPK ASMETSPNGN  120
ERPTKQLRNN SWNGKKSQHQ TPETQYASCS NLLSFVNSNY INELGLGKPK VEMACPKIDN  180
STLAEMLISQ GTLGNQNYHF KANQEAIKIE TRPKLSQPQD HIIAERKRRE KLSQRFIALS  240
ALVPGLKKMD KASVLGEAVK YLKQLQEKVS TLEEEQNRKR TVESVVTVKK SQLSDDAEDS  300
SSSDTGGTLE EALPEIEARF CERNVLIRIH CEKKKGIIEK TISEIEKLHL KVTNSSALSF  360
GSFILDITII AQMDMEFCMT VKDLVRSLRS AFSYYWLSRQ SNTLKVSGSS PGDAICFCFD  420
FSKSNNLGKR RRFNFEFRSH KSRVIWGKLR LMEKMYENIS ATFRPLRPPR IATNHISPII  480
SFSILIGPRH QPRTFFPKTN NCIYTNAFVI LSPKPTRENT FIIIERIISN RTMKSLLLFG  540
IAVLLFHSCL ASEIPYPKAI SDLKDSIMKG FGITAEDEVK ITGFDPREAE VGHSVEYRFD  600
LEIDHQVIPF KLLEDVKRWD YVDLPIFQSQ DQAHTGLVPK RASDNRLPVL APFVLAGPME  660
LWIHDANDMR LSLPHDVDAG VLKKVILAEG AAVTVKGARS VSLRQPLEFP LPLNRTENGF  720
ANGLLALAGH LRHASRTQAS PILSLRIVGP TSIAAAPSDS TTSTSLKLKR LAPGLVELSS  780
PSKTKEVEPF SSVDLEGEAP TILTPTQFST LWPLSSINGS NANLLGFEKL LHSVLGHKAD  840
KKGSFRLLKA DVSAQTYVKI GFKAEKKVNE EDLEGYPAWR TKPETLTTHF EVLAKVDGER  900
VVPEKVMQLK PVVPVDNVAP NLLAGNVSMS KMQDVHPPPN PFSLLSMAFS FFHEFFAIFS  960
SAVFHCMRSF HMEISSIRGL PELGIIEDPN FLHQWQLNPT DTSSLTGAAF GESLQKLSFS  1020
GNSNFNPKAS METSPNGNER PTKQLRNNSW NGKKSQHQTP ETQYASCSNL LSFVNSNYIN  1080
ELGLGKPKVE MACPKIDNST LAEMLISQGT LGNQNYHFKA NQEAIKIETR PKLSQPQDHI  1140
IAERKRREKL SQRFIALSAL VPGLKKMDKA SVLGEAVKYL KQLQEKVSTL EEEQNRKRTV  1200
ESVVTVKKSQ LSDDAEDSSS SDTGGTLEEA LPEIEARFCE RNVLIRIHCE KKKGIIEKTI  1260
SEIEKLHLKV TNSSALSFGS FILDITIIAQ MDMEFCMTVK DLVRSLRSAF SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-142171194564Transcription factor MYC2
5gnj_B8e-142171194564Transcription factor MYC2
5gnj_E8e-142171194564Transcription factor MYC2
5gnj_F8e-142171194564Transcription factor MYC2
5gnj_G8e-142171194564Transcription factor MYC2
5gnj_I8e-142171194564Transcription factor MYC2
5gnj_M8e-142171194564Transcription factor MYC2
5gnj_N8e-142171194564Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111421147ERKRRE
211431148RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g04780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-54bHLH family protein