PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g01660.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 736aa    MW: 82130.9 Da    PI: 6.4188
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g01660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.71.2e-36119194176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +Cqv+gCe+d+se+k yhrrh+vC  +++a++v+++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k
  Vang03g01660.1 119 RCQVPGCEVDISELKGYHRRHRVCLRCANATTVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRK 194
                     6************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-28114181IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.658117194IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-33118195IPR004333Transcription factor, SBP-box
PfamPF031101.3E-27120194IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
LNSIQLGFPF LTLSMEPQQS LPPMDDSEDP SSTWDFSYLL DFNLDEDHTD NSLPFSSLFN  60
DAPEIPNDRV RKRDPRLTCS NFLAGRVPCA CPELDAKLED EGLPGKKRAR TARASSSARC  120
QVPGCEVDIS ELKGYHRRHR VCLRCANATT VVLHGEPKRY CQQCGKFHVL SDFDEGKRSC  180
RRKLERHNTR RRRKPLVESG DCSNLSNEIN DIVVLPDHGE EPVPILVSAP DAQNVNSDSV  240
VSLPVSGETR VNSGNTSNSP SYCDNKSAYT SMVGFRLSFM IGIQQNFLEG YDTKYIKALL  300
LQFSCQMHLQ IFQWLASMPV ELEGYIRPGC TILTSFIAMP NIMWINHISM VTDGTSVTKV  360
EVNLQAPRLH YVHPTCFEAG KPMEFVACGS NLLQPKFQLL VSFSGKYLKC EYCVPSPHNW  420
TEENISCAFD NQLYKIYVPH TEESLSGPAF IEVENESGLS NFIPVLIADK ETCSEMKILQ  480
QKLDSSLLSN QFRSASGGSI CSSCETFTLS HTSSDLLVDI AWLLKDTTSE NFDRVITASQ  540
IQRYCHLLDF LMCNESTVML EKILPNLIIL TASMKSNFVI NTTSDVDTRQ LLNHIHNAQI  600
TIFQKHQKNG SIIVQPEMEG FRLAQGCSHD NKISVAINSQ GILSRADAKW GVLKNLTCSD  660
KNERIPLLKR DIIMNVEELP EIYGRGCLGR GLLTPRPAIF VMVSIAVCLG VCVAVLHPGG  720
VTELAVSVRR CLFNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-43116200286squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180192RRKLERHNTRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g01660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436754.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A0S3S3G10.0A0A0S3S3G1_PHAAN; Uncharacterized protein
STRINGXP_007147848.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.31e-171squamosa promoter binding protein-like 7