PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g01100.1 | ||||||||
Common Name | LR48_Vigan09g201300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 249aa MW: 27974 Da PI: 6.6052 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.9 | 1.5e-29 | 137 | 221 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+ Li++r+++e+++r +k+ Wee+s++m + g++rs+k+Ckekwen+nk+yk++ + kkr ++s++cpyfd+l+ Vang03g01100.1 137 RWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMYALGYNRSAKKCKEKWENINKYYKRTIGSGKKR-RQNSKSCPYFDELD 221 8****************************************************************999998.788889******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-4 | 129 | 193 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.782 | 130 | 194 | IPR017877 | Myb-like domain |
CDD | cd12203 | 3.19E-27 | 136 | 200 | No hit | No description |
Pfam | PF13837 | 2.2E-21 | 136 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDLFAADHFP VPDHVAPFPD SGDLLFPADL LSHCHNPQKL RPIRSLPSAL NAHPRPPDPI 60 ASGSGHTPSQ ESDSALDAED EEENDDNSSA SPEGNGPRKR RRKTVRKLEV EACSKREEGE 120 VEVNAHKEFN SDHSKSRWPD VEVQSLITVR TSLEHKFRFM GSKGSIWEEI SEAMYALGYN 180 RSAKKCKEKW ENINKYYKRT IGSGKKRRQN SKSCPYFDEL DILYRNGLLS IGNALSNTTD 240 APQIEQKE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 101 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g01100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435353.1 | 6e-99 | PREDICTED: trihelix transcription factor GT-2 isoform X2 | ||||
TrEMBL | A0A0L9VF92 | 3e-95 | A0A0L9VF92_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S436 | 3e-95 | A0A0S3S436_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147613.1 | 2e-89 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11112 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 4e-33 | Trihelix family protein |
Publications ? help Back to Top | |||
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