PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g01050.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 300aa MW: 34378.1 Da PI: 7.9868

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g01050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.9	6.2e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk + +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Vang03g01050.1 68 EYYGNFARKNGFSIRKERSRISPQLG-IYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHELL 159 59******************8888.****************9******************99877789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-20	68	159	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MTSIPSKNLC VRRQQCPCGD WKCYITYEGD SEEGSAAPEM VKEEKASSGA MITPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRISP QLGIYKRDFV CYRSGFAPVK KKPNGEHHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKMLEQ EKGIQGGQLP FLERDVRNFV QNRKKVVLEN EALLSVGGEW 240 FQEYQSLAET LFQESSITKE RSDYVRKELT KELNRILNEV RNLPEADGVC MNMSVSPAN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g01050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017434177.1	1e-171	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_017434178.1	1e-171	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	1e-104	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A1S3VLA3	1e-168	A0A1S3VLA3_VIGRR; Uncharacterized protein
TrEMBL	A0A1S3VLH9	1e-169	A0A1S3VLH9_VIGRR; Uncharacterized protein
TrEMBL	A0A1S3VM30	1e-169	A0A1S3VM30_VIGRR; Uncharacterized protein
STRING	XP_007147626.1	1e-169	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-107	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]