PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g00910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 367aa MW: 42848.4 Da PI: 9.634 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.9 | 4.8e-10 | 73 | 100 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++G tC++G C+F+H+ Vang03g00910.1 73 WKVAICGEYMKSGfkTCSRGTACNFIHC 100 899************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54928 | 4.15E-6 | 21 | 70 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 2.6E-7 | 24 | 68 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 2.0E-11 | 27 | 49 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 2.0E-11 | 54 | 78 | IPR009145 | U2 auxiliary factor small subunit |
SMART | SM00356 | 8.5E-5 | 72 | 101 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.878 | 72 | 102 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-7 | 73 | 100 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 2.0E-11 | 92 | 104 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MMVALVIWLS AIGGLINLAK KDMVCKNGSF HLRGNVYVQY KALDSALLAA NLINRHDFTG 60 KRVTCQFVNL TRWKVAICGE YMKSGFKTCS RGTACNFIHC FRNPGGDYEW ADSDKPPPKF 120 WVEKMIALFG YSDDYETSRE QGNFSLSKTD SDRYHCRRSR SRETDRLSCG HSGRRKHEDE 180 RKQRTPYEDR NASLKNTHKR KSRGTTDTDS DREWLEKEEI RERRHEYTRN GSFNKRRDEN 240 SRSHEEDSDM DCDTRDNEKQ HGRNPRKCDN DIRVWINEAA GLDGDRDVRK HRIRESSGHQ 300 SGDASESNKD LFGRVEMETL HDHFRKTYSH RRSGVQVSVK GRDQNDKVDR DGSRKDSYKR 360 DHHKRK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g00910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017436310.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 | ||||
Refseq | XP_017436311.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X2 | ||||
Refseq | XP_017436312.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X3 | ||||
TrEMBL | A0A0S3S1J1 | 0.0 | A0A0S3S1J1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148590.1 | 1e-171 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 9e-61 | C3H family protein |