PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g00760.1
Common NameLR48_Vigan09g275100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 638aa    MW: 73095.2 Da    PI: 9.0199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g00760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.4e-08458499240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE +ll ++ +++++g   +W+ I++++g+gR+ +++
   Vang03g00760.1 458 KPWSKEEIDLLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 499
                      69************************************9987 PP
2Myb_DNA-binding27.57.5e-09580624345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++ 
   Vang03g00760.1 580 VWSAVQERALVQALKAFPKEtsqRWERVATAVP-GKTVNQCKKKFA 624
                      6********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1104.7E-2091196IPR001623DnaJ domain
SuperFamilySSF465659.81E-1993201IPR001623DnaJ domain
SMARTSM002711.9E-1294169IPR001623DnaJ domain
PfamPF002261.4E-1695174IPR001623DnaJ domain
PROSITE profilePS5007617.64995177IPR001623DnaJ domain
CDDcd062577.59E-1295166IPR001623DnaJ domain
PRINTSPR006252.5E-7100118IPR001623DnaJ domain
PRINTSPR006252.5E-7118133IPR001623DnaJ domain
PRINTSPR006252.5E-7149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.69452507IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-5452500IPR009057Homeodomain-like
SuperFamilySSF466897.48E-8453501IPR009057Homeodomain-like
SMARTSM007171.8E-7456509IPR001005SANT/Myb domain
PfamPF002492.9E-7458499IPR001005SANT/Myb domain
CDDcd001673.36E-5459501No hitNo description
PROSITE profilePS512939.859576631IPR017884SANT domain
SMARTSM007174.9E-9577629IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-5577624IPR009057Homeodomain-like
SuperFamilySSF466893.51E-9579634IPR009057Homeodomain-like
PfamPF002493.3E-7580626IPR001005SANT/Myb domain
CDDcd001674.96E-6581627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MAVHTKFRLI TYSQEIVDGQ PIFVSSNCLP TKALKYEPAG HSFHSAALKL RGVQEDKNEA  60
DDKKVPEDKE QTYLPSDSYS SKSKKKSGTG DKQQDHYALL GLGHLRYLAT EDQIRKSYRE  120
TALRFHPDKQ AALLLAEETE AAKQAKKDEI ESHFKAIQEA YEVLIDSVKR RIYDSTDEFD  180
DEIPTDCAPQ DFFKVFGPAF MRNGRWSVNQ PIPTLGDDNT TLKEVDNFYN FWYSFKSWRE  240
FPHADEFDLE QAESRDHKRW MERQNAKLTE KARKEDYARI RTLVDNAYKR DPRILRRKEE  300
EKAEKQRKKE AKYLVKKLQE EEAARIAEEE KQRKEEEERQ AAEAALQQKK VKEKEKKLLR  360
KERARLRTLS GPIISQRLLD ISDDDVEGLC MSLDIEQMRS LCENMEGKQV LLEQASVLRD  420
AMSSKKEVAD EKTNKKDANG SIKANGSASR SNVEKKEKPW SKEEIDLLRK GMQKYPKGTS  480
RRWEVISEYI GTGRSVEEIM KATKTVLLQK PDSSKAFDTF LEKRKPGAQS IESPLSTREE  540
LEGVSTLAST NSTEESHSKS TDNQNSASAN GVSSSSEQDV WSAVQERALV QALKAFPKET  600
SQRWERVATA VPGKTVNQCK KKFAMMKENF RNKKSAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-2119129420123Zuotin
5dje_B8e-2119129420123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g00760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436871.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_017436873.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_017436874.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_017436875.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A0L9VGQ70.0A0A0L9VGQ7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S1P50.0A0A0S3S1P5_PHAAN; Uncharacterized protein
STRINGXP_007148540.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]