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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g00740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 184aa MW: 19830.3 Da PI: 4.9216 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.8 | 2.9e-28 | 1 | 110 | 24 | 114 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............................. 88 ++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Vang03g00740.1 1 MPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSFRSSGSTLSAPpsnylrkryredlfkddninsqsqnesgd 95 9*****************************************99999888766666666665555566667777777666666654322222222 PP TCP 89 kaaksaakskksqksaasalnlakes 114 +s+k ++ l+l k++ Vang03g00740.1 96 G---------SSPKTPN--LQLPKQQ 110 1.........2222222..3333322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 21.372 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.9E-28 | 1 | 99 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS TLNVSFRSSG 60 STLSAPPSNY LRKRYREDLF KDDNINSQSQ NESGDGSSPK TPNLQLPKQQ PQQQNEAGSG 120 LLRPTNLLPA TAMFNLPSAL EFQGARAGSL QLGSMLMPQQ PSQHLGLAIL EVELNEFVIS 180 ECF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g00740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-111 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485466.1 | 6e-51 | transcription factor TCP8 | ||||
Swissprot | Q9LQF0 | 1e-36 | TCP23_ARATH; Transcription factor TCP23 | ||||
TrEMBL | A0A3Q8TD56 | 7e-53 | A0A3Q8TD56_DIOKA; Transcription factor TCP1 | ||||
STRING | XP_004485466.1 | 2e-50 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 6e-39 | TCP family protein |