PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0352s00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 28054.8 Da PI: 7.1081 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 34.3 | 4.7e-11 | 108 | 157 | 13 | 59 |
E--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 13 KevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 K+ +gs +sYYrCt++ gCp+ k+v+r +e p + ++tY g+H+++ Vang0352s00010.1 108 KKPRGSYKRKSYYRCTHKhdkGCPAIKQVQRIQEHPPLYQTTYYGHHKCK 157 677899999********99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.4E-11 | 108 | 158 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-9 | 108 | 158 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-11 | 108 | 158 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-12 | 108 | 157 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.727 | 108 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MVNQPSTERR AMEEELVKGR DIANQLLEVC IHRSNTYQHH HEDVQGSMLP FIEDLVRKVL 60 CSFTNTLLLL NTDNDVAIPM TVKDVPSFSK CPNPQHTDEV CKGFFQTKKP RGSYKRKSYY 120 RCTHKHDKGC PAIKQVQRIQ EHPPLYQTTY YGHHKCKSSS SSDIVMESAT PSGSSVFLSF 180 SNTLPTKEQY QLKSCSLSSS TKQEPVEVIQ DELLADHSPL ALSDYLLLCD YELDFNYMRH 240 VTTLF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0352s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521524.1 | 1e-159 | probable WRKY transcription factor 54 | ||||
Refseq | XP_017423510.1 | 1e-159 | PREDICTED: probable WRKY transcription factor 70 | ||||
TrEMBL | A0A0L9UK96 | 1e-158 | A0A0L9UK96_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3VTX8 | 1e-158 | A0A1S3VTX8_VIGRR; probable WRKY transcription factor 54 | ||||
STRING | XP_007149559.1 | 1e-132 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 2e-13 | WRKY DNA-binding protein 38 |