PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0349s00180.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WOX

Protein Properties

Length: 280aa MW: 31088 Da PI: 7.0992

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0349s00180.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.2	2.9e-08	53	89	2	37
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 ++R+++++eq+++Le+ F++ +p ++e++++ +l Vang0349s00180.1 53 KSRWNPKPEQIRILEAIFNSgMVNPPRDEIKKIRVQL 89 89***************99**********9998 PP
2	Wus_type_Homeobox	62.5	9.1e-21	52	94	2	44
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGk 44 +++RW+P+peQi+iLe++++sG+++P+++ei++i+ +L+eyG+ Vang0349s00180.1 52 PKSRWNPKPEQIRILEAIFNSGMVNPPRDEIKKIRVQLQEYGQ 94 689***************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	7.0E-6	53	90	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MSSSNKHWPS MFKSKPCNSH NQWQHGNNSS VLSTGCQRSP YTPGNEEKSP EPKSRWNPKP 60 EQIRILEAIF NSGMVNPPRD EIKKIRVQLQ EYGQTYLQSH NYNNTALLPP AIESFSFPLH 120 NNGQGVIVND TITTHGFSLP QFSNNIMQSQ PQCQPKVGPS SSLFLNEIMN QEKALKSMHR 180 QQLSSHPTSS STTTVAPEIS TLPCPITQLQ GVGGEVTADR EKCIVFINDV AFEVMMGPFN 240 VRQAFGDEAV LIHSSGPVPT DDWGITLHPL QHGAYYYLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0349s00180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017431853.1	1e-124	PREDICTED: WUSCHEL-related homeobox 9-like
Refseq	XP_017431859.1	1e-124	PREDICTED: WUSCHEL-related homeobox 9-like
Refseq	XP_017431863.1	1e-124	PREDICTED: WUSCHEL-related homeobox 9-like
Refseq	XP_017431866.1	1e-124	PREDICTED: WUSCHEL-related homeobox 9-like
Refseq	XP_017431871.1	1e-124	PREDICTED: WUSCHEL-related homeobox 9-like
Refseq	XP_017431875.1	1e-124	PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBL	A0A0S3R1N0	1e-122	A0A0S3R1N0_PHAAN; Uncharacterized protein
STRING	XP_007153888.1	1e-104	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3824	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	8e-41	WUSCHEL related homeobox 8