PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0347s00060.1
Common NameLR48_Vigan08g075000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 566aa    MW: 62867.9 Da    PI: 6.4357
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0347s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.31.1e-1261955641373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l+elL+  A+a+s+++++  ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l++ +l++e++P+lkf
  Vang0347s00060.1 195 LKELLIVSAKALSENNMKDFDRLIEKARSVVSITGEPIQRLGAYLVEGLVARKGASGNNIYRALRCREPE---GKDLLSYIQLLYEICPYLKF 284
                       5789*****************************************************************9...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       ++++aN aI ea   e+++HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rLa++ +++++p+ef+  v  
  Vang0347s00060.1 285 GYMAANGAIAEACRDEDHIHIIDFQIGQGIQWMTLLQALAARPGGAPHVRITGIDDPLSKyvRGDGLEAVGKRLAEISQTFNIPVEFHS-VPV 376
                       ********************************************************999999***************************.577 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                           ++ ++L+++pgEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkv +++eqe+++n+++F++rf+e+l+yy a+f+s++++l+r
  Vang0347s00060.1 377 LAPYVTKDMLDIRPGEALAVNFPLQLHHTADESVDMNNPRDGLLRLVKSLSPKVTTLIEQESNTNTTPFFNRFIETLDYYLAIFESIDVSLAR 469
                       7889999************************************************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       +s++ri+vE+++l+r+ivn+vaceg+er+erhe l+kW++r+++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L+s+
  Vang0347s00060.1 470 KSKDRINVEQHCLARDIVNIVACEGKERVERHELLGKWKSRFTMAGFSQYPLSSYVNSVIRSLLRCYS-EHYNLVEKDGAMLLGWKDRNLISA 561
                       ****************************************************************9999.66********************** PP

              GRAS 371 SaW 373
                       SaW
  Vang0347s00060.1 562 SAW 564
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.033169546IPR005202Transcription factor GRAS
PfamPF035143.8E-124195564IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDLNEFSSVG VTSSAGTPCT SSHIPISAIP NRLLGSLKHD IEHSPNSALS THFDSDTLSS  60
ALSDGQEQHT AGEIHSGVNP LQETNHYLYR PVSSVDHLQD GKHLSTRCFF PQDIGYDHET  120
RYALLELETA LMAPDGDDQV TTSSTSLGVN RRPTTSAQRN RSWSHEGQPS DVARVGKRHK  180
STEEVSLQGF PSTNLKELLI VSAKALSENN MKDFDRLIEK ARSVVSITGE PIQRLGAYLV  240
EGLVARKGAS GNNIYRALRC REPEGKDLLS YIQLLYEICP YLKFGYMAAN GAIAEACRDE  300
DHIHIIDFQI GQGIQWMTLL QALAARPGGA PHVRITGIDD PLSKYVRGDG LEAVGKRLAE  360
ISQTFNIPVE FHSVPVLAPY VTKDMLDIRP GEALAVNFPL QLHHTADESV DMNNPRDGLL  420
RLVKSLSPKV TTLIEQESNT NTTPFFNRFI ETLDYYLAIF ESIDVSLARK SKDRINVEQH  480
CLARDIVNIV ACEGKERVER HELLGKWKSR FTMAGFSQYP LSSYVNSVIR SLLRCYSEHY  540
NLVEKDGAML LGWKDRNLIS ASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-611955655375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0347s00060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431679.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0L9V4J40.0A0A0L9V4J4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SAN30.0A0A0S3SAN3_PHAAN; Uncharacterized protein
STRINGXP_007132993.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]