PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0322s00110.1

Common Name

LR48_Vigan464s001100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 386aa MW: 42272.9 Da PI: 6.9498

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0322s00110.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.3e-30	144	203	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+ Vang0322s00110.1 144 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITTYEGTHNHP 203 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-32	129	205	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-28	137	205	IPR003657	WRKY domain
PROSITE profile	PS50811	29.207	139	205	IPR003657	WRKY domain
SMART	SM00774	2.7E-37	144	204	IPR003657	WRKY domain
Pfam	PF03106	1.8E-27	145	203	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MGRSQNPTNM EIDLSLKIDA DDEQKPQLDE QVKEYNHEQK MPQILDHNKE EVPEAAAGEI 60 EDDASVVQTS FQDNTKTKEP STSQKESDVG NKEDRKDQQL ASFVSVQNKL QRTHELPGMT 120 THAISPPNRK ARVSVRARCE AATMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK 180 QVQRCIDDMS ILITTYEGTH NHPLPVGATA MASTASAAAS FMLLDSSNPI SDGTSSFTQA 240 PLPYNAFHPL NSASNFRSIN PNDPSKGVVL DLTSNLSEPL RFSTGSSSNT TTDTRFSWMP 300 NKYHGGGAIS MNNNFHKPRP VDIHDRMWKG EESKQLDENV SAIASDPKFR VAVAAAITSL 360 MNKESHNANH PIGTSFGPRS GQNGS*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MGRSQNPTNM EIDLSLKIDA DDEQKPQLDE QVKEYNHEQK MPQILDHNKE EVPEAAAGEI  60
EDDASVVQTS FQDNTKTKEP STSQKESDVG NKEDRKDQQL ASFVSVQNKL QRTHELPGMT  120
THAISPPNRK ARVSVRARCE AATMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK  180
QVQRCIDDMS ILITTYEGTH NHPLPVGATA MASTASAAAS FMLLDSSNPI SDGTSSFTQA  240
PLPYNAFHPL NSASNFRSIN PNDPSKGVVL DLTSNLSEPL RFSTGSSSNT TTDTRFSWMP  300
NKYHGGGAIS MNNNFHKPRP VDIHDRMWKG EESKQLDENV SAIASDPKFR VAVAAAITSL  360
MNKESHNANH PIGTSFGPRS GQNGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	131	207	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0322s00110.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017408135.1	0.0	PREDICTED: probable WRKY transcription factor 9
Swissprot	Q9C9F0	4e-67	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A0L9TCD1	0.0	A0A0L9TCD1_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R0C5	0.0	A0A0S3R0C5_PHAAN; Uncharacterized protein
STRING	XP_007159029.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9320	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	6e-62	WRKY DNA-binding protein 9

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]