PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g15530.1

Common Name

LR48_Vigan10g254900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ZF-HD

Protein Properties

Length: 315aa MW: 34025.6 Da PI: 8.7551

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g15530.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	33.5	9.8e-11	82	101	40	59
ZF-HD_dimer 40 alkCaACgCHRnFHRrevee 59 ++kCaACgCHRnFHRre+ee Vang02g15530.1 82 SIKCAACGCHRNFHRREPEE 101 89**************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-9	67	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.1E-7	82	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.52E-19	165	236	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.5E-30	167	237	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.1E-27	175	232	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MEIITPTPPP TAVTTTNAAP KSPELDIETP TRIHQAAGNP NPSPKPVSFS NGVLKRHHAN 60 NRTAAPVVYK ECLKNHVASL GSIKCAACGC HRNFHRREPE EPPISPATHH VLEYQPHHRH 120 HPPPPPPHRS PNSSSPPPIS SYPSAPHMLL ALSSGGGLSV APENTAAPAL AHHSRKRFRT 180 KFTQEQKEKM HEFADKVGWK MQKRDENMVM EFCSEVGVDR GVLKVWMHNN KNTFAKKDNL 240 NGSPANGTNH VASPNKATVR SNVNGLEQEH GGGINGNSDH DHNHNHNLGS SHDVNEYDND 300 SGTNGGGTNG SSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-22	174	233	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g15530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017438740.1	1e-180	PREDICTED: zinc-finger homeodomain protein 9
Swissprot	Q9LHF0	1e-59	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A0L9VP28	1e-178	A0A0L9VP28_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T8B1	1e-178	A0A0S3T8B1_PHAAN; Uncharacterized protein
STRING	XP_007151228.1	1e-147	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	7e-56	homeobox protein 34

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]