 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vang02g14270.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
Whirly |
| Protein Properties |
Length: 287aa MW: 32255 Da PI: 8.2857 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang02g14270.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 41.9 | 1.9e-13 | 75 | 132 | 1 | 56 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerk..ydWekkqsfa 56
svy +k+ l++ ++ p+fe+ +sg++ ++r+G +ll++a++++ + ydW++kq+
Vang02g14270.1 75 SVYTAKGVLTLTPKPPEFESKASGAFGVSREGYMLLQFAPSVGXEEsiYDWNQKQVVQ 132
79****************************************975444*******865 PP
|
| 2 | Whirly | 59.8 | 5.8e-19 | 159 | 247 | 54 | 139 |
Whirly 54 sfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvk...gnesfsvPvskaefavlrsllv 139
+f+ls+ e+++l+ l++ es ef +a+ +sn +vrk+lkvePl d + + ++lsv ++ + +e++++P+++a+ avlrs+++
Vang02g14270.1 159 VFSLSVSEMGTLICLGAMESWEFSRKTAKAKSNGIEVRKVLKVEPLLDATSHSFSLSVYKKPANmeeIEENIYLPITRAQLAVLRSIFN 247
7*********************************************************9875551116789****************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MFHIVHSLPL KHLSLPFHSF VPRIFIVPLN RNFSFIFPTS LFVRCNHSNI VEPFPPLPQY 60
PSVAELSQRV YADYSVYTAK GVLTLTPKPP EFESKASGAF GVSREGYMLL QFAPSVGXEE 120
SIYDWNQKQV VQDSYVFALQ MYKCVVDISL SGCLGATLVF SLSVSEMGTL ICLGAMESWE 180
FSRKTAKAKS NGIEVRKVLK VEPLLDATSH SFSLSVYKKP ANMEEIEENI YLPITRAQLA 240
VLRSIFNYIV PYLLGWNAFA STIKAEVYSQ MNSANPRYSA NNEWSR*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 2e-52 | 69 | 285 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 2e-52 | 69 | 285 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 2e-52 | 69 | 285 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 2e-52 | 69 | 285 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015044 | 2e-99 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
