PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g14200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 114aa MW: 13106.1 Da PI: 9.4845 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.6e-18 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Vang02g14200.1 39 KGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYL 86 79*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 32 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.434 | 34 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-13 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-16 | 39 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.42E-21 | 40 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.35E-10 | 41 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-6 | 90 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MISTSSLLLL FSLSYVYMYN IMDKKPCNST SSHDPEVRKG PWTMEEDLIL INYIANHGEG 60 VWNSLAKASG LKRTGKSCRL RWLNYLRPDV RRGNITTEEQ LLIFELHSKW GNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-17 | 34 | 113 | 22 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g14200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-113 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014509861.2 | 2e-67 | myb-related protein 305-like | ||||
Swissprot | P81391 | 9e-55 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A0S3T7U9 | 9e-78 | A0A0S3T7U9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151019.1 | 1e-66 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 2e-51 | myb domain protein 24 |
Publications ? help Back to Top | |||
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