PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g14120.1 | ||||||||
Common Name | LR48_Vigan10g280400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 194aa MW: 21736.9 Da PI: 9.8509 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.3e-14 | 153 | 193 | 2 | 43 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 g WT+eEd lv++v+++G + W+ Ia+ ++ gR +kqc++r Vang02g14120.1 153 GWWTPEEDSSLVELVNEFGLKKWTQIAKFLP-GRIGKQCRER 193 55*****************************.********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.948 | 147 | 193 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-17 | 148 | 193 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-13 | 148 | 193 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-5 | 151 | 193 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-13 | 153 | 193 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-13 | 155 | 193 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MFPSQSPILI PSSPPPPIMF HPNNTFHHIQ DHTFGIPTQN PNFLFEGPLK PTTTPFCGML 60 TPSLGSSLGG FANVSHHHPM MLPPPNNNNA LHGQHEGKVI WDFSQKTMIH PSYASSSSNS 120 PSPLSFPNIT QYKWKSNQKI KMKKDTNDLI IKGWWTPEED SSLVELVNEF GLKKWTQIAK 180 FLPGRIGKQC RER* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g14120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439460.1 | 1e-139 | PREDICTED: transcription factor MYB98-like | ||||
TrEMBL | A0A0L9VPT3 | 1e-138 | A0A0L9VPT3_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA03G15930.2 | 3e-59 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40727 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 6e-16 | myb domain protein 118 |
Publications ? help Back to Top | |||
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