PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g12690.1
Common NameLR48_Vigan10g218600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 377aa    MW: 41855.3 Da    PI: 7.8401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g12690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-18101146147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+qlG+ +W++Ia++++ gR++k+c++rw++ 
   Vang02g12690.1 101 RGHWRPVEDAKLKELVAQLGPQNWNSIAEHLP-GRSGKSCRLRWFNQ 146
                      899*****************************.***********996 PP
2Myb_DNA-binding55.71.2e-17153196146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+e+l++a+k +G++ W+ I+r ++ gRt++ +k++w+ 
   Vang02g12690.1 153 RKAFSEEEEERLLNAHKVYGNK-WAMISRLFP-GRTDNAVKNHWHV 196
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.43996147IPR017930Myb domain
SMARTSM007174.2E-15100149IPR001005SANT/Myb domain
SuperFamilySSF466893.41E-28101194IPR009057Homeodomain-like
PfamPF002492.2E-17101146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-26102154IPR009057Homeodomain-like
CDDcd001677.40E-14104145No hitNo description
PROSITE profilePS5129425.356148202IPR017930Myb domain
SMARTSM007171.1E-14152200IPR001005SANT/Myb domain
PfamPF002494.4E-14153195IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-20155200IPR009057Homeodomain-like
CDDcd001671.44E-11155195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
LRNGGSGFSA EMNVFPLASV PVLALQCSNT LGFMGHVGGT ETECSDMPFK NLNSSLIQHQ  60
EKEEECFGIQ NKDLSLRPGE ELEAKGSSFT EKIRQTKLCA RGHWRPVEDA KLKELVAQLG  120
PQNWNSIAEH LPGRSGKSCR LRWFNQLDPR INRKAFSEEE EERLLNAHKV YGNKWAMISR  180
LFPGRTDNAV KNHWHVIMAR RQREKSCVFR RRKPTFQILP PKDLDLILPV NGGSESTISS  240
TIIDESASTE TNLSFTPSLA KPTPLPFLNH CHVQNLQTFG GSLMGLSGES RKALREVSFG  300
MYFGGWRDSF QVGHMERLMG VDQSNYSESN SSEVSISESV ATNNTTNLSI SGENESMGNN  360
KANKMIFIDF LGVGAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-321012017107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199213RRQREKSCVFRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g12690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439098.10.0PREDICTED: transcription factor MYB39-like
TrEMBLA0A0L9VNG60.0A0A0L9VNG6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T9700.0A0A0S3T970_PHAAN; Uncharacterized protein
STRINGXP_007151516.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-65myb domain protein 56
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]