PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 359aa MW: 39389.3 Da PI: 7.901

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g12630.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.3e-16	90	135	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed +l++ v+q+G+ +W++ a++++ gR++k+c++rw++ Vang02g12630.1 90 RGHWRSAEDAKLKEFVAQFGPQNWNSMAEHLP-GRSGKSCRLRWFNQ 135 899***************************.*********996 PP
2	Myb_DNA-binding	57.8	2.5e-18	142	185	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+e+l++a+k +G++ W+tI+r ++ gRt++ +k++w+ Vang02g12630.1 142 RKAFSEEEEEKLLNAHKVYGNK-WATISRLFP-GRTDNAVKNHWHV 185 789*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.912	85	136	IPR017930	Myb domain
SMART	SM00717	5.1E-13	89	138	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-15	90	135	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.72E-27	90	183	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-25	91	143	IPR009057	Homeodomain-like
CDD	cd00167	2.72E-12	93	134	No hit	No description
PROSITE profile	PS51294	25.203	137	191	IPR017930	Myb domain
SMART	SM00717	1.6E-15	141	189	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-15	142	184	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-20	144	189	IPR009057	Homeodomain-like
CDD	cd00167	2.08E-12	144	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MSAEMNVFPS PPVAVIGLQC FNIIGVMGHV GDMKSESSDI PFQILNPKSV EEEESSGVEA 60 TGLSLKPGEE LQANSYPAKG KIRHTKLCAR GHWRSAEDAK LKEFVAQFGP QNWNSMAEHL 120 PGRSGKSCRL RWFNQLDPRI NRKAFSEEEE EKLLNAHKVY GNKWATISRL FPGRTDNAVK 180 NHWHVIMARR QREKSCVFRR RKPTFQILPP KDLDLILPVN GCSESTISST IIDESASTGT 240 NLSFTSSSAK STPLPFLNHC QVQNVQTFGG ALMGLSGESR TPDRDVSFNK HFGAGKGSSE 300 TGHMGRVMGV DQSHYSDSNS SEVSESVATN KTTNLSMYGE SDNSANMLFI DFLGVGTT*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MSAEMNVFPS PPVAVIGLQC FNIIGVMGHV GDMKSESSDI PFQILNPKSV EEEESSGVEA  60
TGLSLKPGEE LQANSYPAKG KIRHTKLCAR GHWRSAEDAK LKEFVAQFGP QNWNSMAEHL  120
PGRSGKSCRL RWFNQLDPRI NRKAFSEEEE EKLLNAHKVY GNKWATISRL FPGRTDNAVK  180
NHWHVIMARR QREKSCVFRR RKPTFQILPP KDLDLILPVN GCSESTISST IIDESASTGT  240
NLSFTSSSAK STPLPFLNHC QVQNVQTFGG ALMGLSGESR TPDRDVSFNK HFGAGKGSSE  300
TGHMGRVMGV DQSHYSDSNS SEVSESVATN KTTNLSMYGE SDNSANMLFI DFLGVGTT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-33	90	190	7	107	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	202	RRQREKSCVFRRRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g12630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439222.1	0.0	PREDICTED: transcription factor MYB46-like
TrEMBL	A0A0L9VMK9	0.0	A0A0L9VMK9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T978	0.0	A0A0S3T978_PHAAN; Uncharacterized protein
STRING	XP_007151515.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF230	34	243

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17800.1	1e-63	myb domain protein 56

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]