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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g11940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 232aa MW: 25969 Da PI: 6.8501 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119 | 5.9e-37 | 13 | 120 | 5 | 89 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.eaesssssasnsss 87 d ski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+aikel+++ s+ss+sec + + +++s+ ++++ Vang02g11940.1 13 PDNISKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSknstnseegakSFSSSSECdD-DCEVVSEIKQKQ 106 5778*********************************************************777777777776666677743.333333333333 PP TCP 88 g............k 89 + + Vang02g11940.1 107 QlitgdaaapnnlQ 120 33434322222221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 30.919 | 12 | 70 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.8E-36 | 14 | 124 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVLLTTVVDD TAPDNISKIY TSQGLRDRRV RLSIEIARKF FDLQDMLGFD KASNTLEWLF 60 NKSKRAIKEL ARSKNSTNSE EGAKSFSSSS ECDDDCEVVS EIKQKQQLIT GDAAAPNNLQ 120 QGHSHHLVGS EAPRDDFNVI EESIVIKRKL KPSLMSSSHH HHQNLMIPKE PPCFNNNNIE 180 YHHPFSNLSP NWDANGSTGR SNFCAIASMN LSTGLQIFGK SWEECTNPRL H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g11940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-177 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013451264.1 | 5e-73 | transcription factor DICHOTOMA | ||||
TrEMBL | A0A151RAI5 | 1e-96 | A0A151RAI5_CAJCA; Transcription factor TCP1 | ||||
STRING | AES84186 | 2e-72 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 2e-25 | TCP family protein |