PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g11040.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 93aa    MW: 10828.6 Da    PI: 10.2082
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g11040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.23.3e-11933125
                    S---SHHHHHHHHHHHHHHHHHHHH CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAe 25
                    kri+nk+n+qvtf+kRrng+l KA+
  Vang02g11040.1  9 KRIKNKINKQVTFAKRRNGLLNKAY 33
                    79**********************8 PP
2SRF-TF37.23.9e-1257822550
                    HHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 25 eELSvLCdaevaviifsstgklyeys 50
                    +ELSvLCdaeva+iifs+  klye+ 
  Vang02g11040.1 57 YELSVLCDAEVALIIFSNCSKLYEFN 82
                    7************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-23184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.025185IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.53E-19287IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-12323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-81034IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-122338IPR002100Transcription factor, MADS-box
PfamPF003194.0E-95781IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MGRGRVELKR IKNKINKQVT FAKRRNGLLN KAYDKEQNQQ ASHICQEKKW LAQQGLYELS  60
VLCDAEVALI IFSNCSKLYE FNSTSRYMYI HK*
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g11040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-95AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546327.13e-27PREDICTED: agamous-like MADS-box protein AGL9 homolog
SwissprotK4DEK01e-25J2_SOLLC; MADS-box protein J2
TrEMBLA0A151SPN83e-27A0A151SPN8_CAJCA; Agamous-like MADS-box protein AGL9 isogeny
TrEMBLA0A4D6KVL53e-27A0A4D6KVL5_VIGUN; MADS-box transcription factor
STRINGGLYMA08G38386.13e-27(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.39e-28MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]