PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g10700.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 1069aa    MW: 120891 Da    PI: 5.1971
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g10700.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13110155248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
   Vang02g10700.1 110 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 155
                      78*****************************.************986 PP
2Myb_DNA-binding32.71.8e-10162205248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
   Vang02g10700.1 162 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 205
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008104159IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-18107158IPR009057Homeodomain-like
SMARTSM007177.0E-15108157IPR001005SANT/Myb domain
CDDcd001678.06E-12112155No hitNo description
PfamPF139215.4E-13112172No hitNo description
SuperFamilySSF466898.41E-21135209IPR009057Homeodomain-like
CDDcd116592.19E-30157208No hitNo description
Gene3DG3DSA:1.10.10.603.7E-14159206IPR009057Homeodomain-like
SMARTSM007171.7E-12160207IPR001005SANT/Myb domain
PROSITE profilePS5129416.443160209IPR017930Myb domain
PfamPF118319.7E-61508756IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1069 aa     Download sequence    Send to blast
MLYNFPEEIN QPVPTQTETE PTRYREERFF PPSAASPVTL LGGDSGDSPQ WQTHPRRRLQ  60
HRFIPLQQST TKGSIWVQLY SRLHNLSRTY YTQIILPVVE AKMRIMIKGG VWKNTEDEIL  120
KAAVMKYGKN QWARISSLLV RKSAKQCKAR WYEWLDPSIK KTEWTREEDE KLLHLAKLMP  180
TQWRTIAPIV GRTPSQCLER YEKLLDAACX KDENYEPGDD PRKLRPGEID PNXESKPARP  240
DPVDMDEDEK EMLSEARARL ANTKGKKAKR KAREKQLEEA RRLASLQKKR ELKAAGIDIR  300
QRKRKRKGID YNAEIPFEKR PPPGFFNVAD EDRPVEQPKF PTTIEELEGK RRVDIEAQLR  360
KQDIAKNKIA QRQDAPSAIL HANKLNDPET VRKRSKLMLP PPQISDQELD EIAKLGYASD  420
LAGSQELTEG SGATXALLAN YAQTPGQGVT PLRTPQRTPS GKGDAIMMEX ENLARLRESQ  480
TPLLGGENPE LHPSDFSGVT PKKKDIQTPN PMLTPSATPG GAGLTPRIGM TPTRDGFSFS  540
TTPKGTPLRD ELRINEDMNM HESTKRVLQR QADMRRSLRS GLGSLPQPKN EYQIVMEPVT  600
EDTEEPEEKI EEDMSDRIAR EKAEEEARQQ AVLRKRSKVL QRELPRPPAA SLELIRNSLI  660
RSDGDKSSFV PPTSIEQADE MIRKELLTLL EHDNAKYPLD DKVNKEKKKG VKRSADLSAV  720
PVIEDFEEDE MKDADKLIKE EVQYLCAAMG HENEPLEEFI EAHXTCLNDL MYFPTRNAYG  780
LXSVAGNMEK LAALQNEFEN VRKKLDDDKE KMVRLEKKVT VITQGYEMRA KKSIWQQIEA  840
TFKQMDIAAT ELECFKALQN QEQLAASHRI NNLWSEVQKQ KELEKTLQNR YGSLIEELEK  900
MQNIMNQSRL KAEQQKEIEA NNAHAETKVN ETDVQDTGSI VPHSAEDGNA QAITVESSHD  960
GTSDQQVEIM QDKSTSSPSH DMNVDSDNMH TIHDSDGKLA NASPADENVV EEVEGSSPTG  1020
GYTDNEENVS EMGASMEINS PNQDVVANAV TTGESSMEET NAVTEETN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.01049033800Cell division cycle 5-like protein
5xjc_L0.01049033800Cell division cycle 5-like protein
5yzg_L0.01049033800Cell division cycle 5-like protein
5z56_L0.01049033800Cell division cycle 5-like protein
5z57_L0.01049033800Cell division cycle 5-like protein
5z58_L0.01049033800Cell division cycle 5-like protein
6ff4_L0.01049033800Cell division cycle 5-like protein
6ff7_L0.01049033800Cell division cycle 5-like protein
6icz_L0.01049033800Cell division cycle 5-like protein
6id0_L0.01049033800Cell division cycle 5-like protein
6id1_L0.01049033800Cell division cycle 5-like protein
6qdv_O0.01049033800Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287306KKRELKAAGIDIRQRKRKRK
2301306RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g10700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433247.10.0PREDICTED: cell division cycle 5-like protein
RefseqXP_017433248.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A0L9V2E50.0A0A0L9V2E5_PHAAN; Uncharacterized protein
STRINGXP_007151972.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]