PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g10420.1

Common Name

LR48_Vigan08g003100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 158aa MW: 17158.3 Da PI: 9.5364

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g10420.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.1	3.4e-16	15	99	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v++++ ++ ++++qCk+k e+++kry+ + ++++ s++p++++l+ Vang02g10420.1 15 EWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVARHVsaraNCTKSPKTSTQCKNKVESMKKRYRSESATAEH-----PSSWPLYSRLD 99 5***********************************85444455556678***********9999986.....567**9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.5E-21	13	99	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MSLGFGSGDR VKRDEWSEGA VSTLLEAYEA KWVLRNRAKL KGHDWEDVAR HVSARANCTK 60 SPKTSTQCKN KVESMKKRYR SESATAEHPS SWPLYSRLDL LLRGTGPLLS SPPPPPLAVP 120 PSSAEPPQQS PPSEPLAVVQ NSNGSNGVDD KLVKILD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g10420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017431476.1	1e-107	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A0L9V364	1e-105	A0A0L9V364_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3S8V7	1e-105	A0A0S3S8V7_PHAAN; Uncharacterized protein
STRING	GLYMA13G26550.1	2e-79	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-54	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]