PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g10000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YA | ||||||||
Protein Properties | Length: 279aa MW: 31622.4 Da PI: 9.6412 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.2 | 2.4e-32 | 149 | 205 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq+Rak+e ekk+ +++rkpylheSRh hA+rR+Rg+gGrF Vang02g10000.1 149 DEPVYVNAKQYHGILRRRQSRAKAELEKKV-IRNRKPYLHESRHLHAMRRARGNGGRF 205 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.1E-37 | 147 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.582 | 148 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.7E-28 | 150 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-24 | 151 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 153 | 173 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.4E-24 | 182 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MVPRFFVAYS TQHSSKREKF SKMPGKPDCD DYGEQIQFHP WWRAIGENAS KSSSADRLNG 60 SPSLPETDKT GGKEYQNIKH DLSSISFSMD KYLAPNPHTE FVGHSVVLTS YSDAQYGQIL 120 TTYGQQVMIN PPLYGMHQAR MPLPLEMEDE PVYVNAKQYH GILRRRQSRA KAELEKKVIR 180 NRKPYLHESR HLHAMRRARG NGGRFLNTKK LENNSSSVTS DEGNNSGANP SANSFNTLHR 240 LTNNENLASS NMVQDMHRVQ SFNNGEEGLN LIQLMMLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-20 | 149 | 209 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g10000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097664 | 1e-158 | BT097664.1 Soybean clone JCVI-FLGm-22I24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432279.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-9-like | ||||
Refseq | XP_017432280.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-9-like | ||||
Refseq | XP_017432281.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-9-like | ||||
TrEMBL | A0A0L9V2V8 | 0.0 | A0A0L9V2V8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007133814.1 | 1e-158 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8962 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 3e-43 | nuclear factor Y, subunit A9 |