PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g10000.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 279aa    MW: 31622.4 Da    PI: 9.6412
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g10000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.4e-32149205158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep+YVNaKQy++Il+RRq+Rak+e ekk+ +++rkpylheSRh hA+rR+Rg+gGrF
  Vang02g10000.1 149 DEPVYVNAKQYHGILRRRQSRAKAELEKKV-IRNRKPYLHESRHLHAMRRARGNGGRF 205
                     79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.1E-37147208IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.582148208IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.7E-28150205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-24151173IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860153173IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-24182205IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVPRFFVAYS TQHSSKREKF SKMPGKPDCD DYGEQIQFHP WWRAIGENAS KSSSADRLNG  60
SPSLPETDKT GGKEYQNIKH DLSSISFSMD KYLAPNPHTE FVGHSVVLTS YSDAQYGQIL  120
TTYGQQVMIN PPLYGMHQAR MPLPLEMEDE PVYVNAKQYH GILRRRQSRA KAELEKKVIR  180
NRKPYLHESR HLHAMRRARG NGGRFLNTKK LENNSSSVTS DEGNNSGANP SANSFNTLHR  240
LTNNENLASS NMVQDMHRVQ SFNNGEEGLN LIQLMMLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20149209262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g10000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976641e-158BT097664.1 Soybean clone JCVI-FLGm-22I24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432279.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like
RefseqXP_017432280.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like
RefseqXP_017432281.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like
TrEMBLA0A0L9V2V80.0A0A0L9V2V8_PHAAN; Uncharacterized protein
STRINGXP_007133814.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-43nuclear factor Y, subunit A9