PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g09680.1 | ||||||||
Common Name | LR48_Vigan10g139000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 916aa MW: 102768 Da PI: 4.7864 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.6e-10 | 7 | 49 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Vang02g09680.1 7 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 49 6*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.578 | 1 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 9.0E-11 | 4 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd11659 | 3.12E-27 | 6 | 52 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 7 | 50 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.01E-11 | 7 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.1E-9 | 8 | 55 | No hit | No description |
Pfam | PF11831 | 2.0E-61 | 352 | 600 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 916 aa Download sequence Send to blast |
MQSSLTEWTR EEDEKLLHLA KLMPTQWRTI APIVGRTPSQ CLERYEKLLD AACXKDENYE 60 PGDDPRKLRP GEIDPNXESK PARPDPVDMD EDEKEMLSEA RARLANTKGK KAKRKAREKQ 120 LEEARRLASL QKKRELKAAG IDIRQRKRKR KGIDYNAEIP FEKRPPPGFF DVADEDRPVE 180 QPKFPTTIEE LEGKRRVDIE AQLRKQDIAK NKIAQRQDAP SAILHANKLN DPETVRKRSK 240 LMLPPPQISD QELDEIAKLG YASDLAGSQE LTEGSGATXA LLANYAQTPG QGVTPLRTPQ 300 RTPSGKGDAI MMEXENLARL RESQTPLLGG ENPELHPSDF SGVTPKKKDI QTPNPMLTPS 360 ATPGGAGLTP RIGMTPTRDG FSFSMTPKGT PLRDELRINE DMNMHESTKR ELQRQADMRR 420 SLRSGLGSLP QPKNEYQIVM EPVTEDAEEP EEKIEEDMSD RIAREKAEEE ARQQALLRKR 480 SKVLQRELPR PPAASLELIR NSLIRSDGDK SSFVPPTSIE QADEMIRKEL LTLLEHDNAK 540 YPLDDKVNKE KKKGVKRSAD LSAVPVIEDF EEDEMKDADK LIKEEVQYLC AAMGHENEPL 600 EEFIEAHXTC LNDLMYFPTR NAYGLXSVAG NMEKLAALQN EFENVRKKLD DDKEKMVRLE 660 KKVTVITQGY EMRAKKSIWP QIEATFKHMD IAATELECFK ALQNQEQLAA SHRINNLWSE 720 VQKQKELEKT LQNRYGSLIE ELEKMQNIIN QCRLKAEQQK EIEANNAHAE TNETKVNDTD 780 VQDTGSIVPH SAEDGNAQAI TVESSHDGTS DQQVGIMQDQ STSSPSHDMN VDSDNMHTIH 840 DSDAKLANAS PAAENVVEIV EGSSPTDGYT ENGENVSEMG ASMEINSPNQ DVVANAVTTG 900 ESSMEETNAV TEEAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
5xjc_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
5yzg_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
5z56_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
5z57_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
5z58_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
6ff4_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
6ff7_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
6icz_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
6id0_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
6id1_L | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
6qdv_O | 1e-168 | 6 | 747 | 61 | 800 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 150 | KKRELKAAGIDIRQRKRKRK |
2 | 145 | 150 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g09680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439656.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Refseq | XP_017439657.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A0L9VKK7 | 0.0 | A0A0L9VKK7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3TAA3 | 0.0 | A0A0S3TAA3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151972.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4072 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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