PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g09110.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HB-other

Protein Properties

Length: 1780aa MW: 198710 Da PI: 5.1488

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g09110.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	49	104	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk Vang02g09110.1 49 PKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKK 104 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-18	29	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.13E-17	34	104	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.649	45	105	IPR001356	Homeobox domain
SMART	SM00389	5.6E-18	47	109	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-16	49	104	IPR001356	Homeobox domain
CDD	cd00086	3.41E-14	50	104	No hit	No description
SMART	SM00571	4.5E-20	536	595	IPR018501	DDT domain
PROSITE profile	PS50827	16.1	536	595	IPR018501	DDT domain
Pfam	PF02791	3.3E-16	538	592	IPR018501	DDT domain
Pfam	PF05066	2.7E-16	718	786	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.8E-9	925	967	IPR028942	WHIM1 domain
Pfam	PF15613	8.0E-13	1105	1177	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1780 aa Download sequence Send to blast
MEGEACSEGE NNRKRGGTDD DSNENNNNND SNHGISSKIV NSNEGQSKPK RQMKTPFQLE 60 TLEKAYAVDN YPSETMRGEL SEKLGLSDRQ LQMWFCHRRL KDKKDLTSKK VPRKVVAEPL 120 PESPTDDPML SPPELGNEYG SGSGSGSSPY ARVEPLNIVP RGVPGYYESP RAMMESRAIA 180 CVEAQLGEPL REDGPILGVE FDPLPPDAFG APLATEQQKL PSFAYDSKIY ERHDSRANKA 240 MARTFRDYRS LPTQAGTRSD TSGPFSKSHL HDAMEGPARN LHLALGNETV PRIRPSQGQF 300 RARLLSQQDK QLIPYQSPTR DDNAAPTREL DPTILNVGTS SHFADHQIVV PENLHAQPSG 360 QVLHNNNAIR IEKKRKSDDV RDVEAHEMKI RKEIEKQDNL RRKNEERMRK EIEKQDRERK 420 KEEERLMRER QREEEKAEKM KIREELRKEK EAERRKAALE KATARRIAKE SMELIEDEHL 480 EMMELAASSK GFSSIIHLDF DTLQHIESFR DSLCVFPPKS VKLRKPFAIK PWINSEKNVG 540 NLLMVWRFLI TFADVLELWS FTLDEFVQAF HDYDSRLLGE IHVALLKVVI KDIEDVARTP 600 STGLGSNQNG AANAGGGHPE IVEGAYAWGF DIRNWHKHLN LLTWPEIFRQ LALSAGYGPQ 660 LKKRSATCSY ANNKDEGRSC EDIISKLRNG SAAENAVAKM HERGLLAPRR SRHRLTPGTV 720 KFAAFHVLSL EGDKGLTVLE LAEKIQKSGL RDLTTSKTPE ASISVALTRD TKLFERIAPS 780 TYCVRQAFRK NPADAESILS EARKKIQIFE NGFLAEEDTD DVEREESESD EIDEDPEVDD 840 LVNSSSANKT SEPCDDFSSN GKENLGHDVG LQGEFDKDLP HFPESSSKKV DTPIAVTGRK 900 PGACEVLNVG NLGEDNMEID ESKPGESWVQ GLAEGEYSDL SVEERLSALV VLVGVANEGN 960 SIRVVLEDRL EAANALKKQM WAEAQLDKFR LKDDIFSKSD FPSLNGNKVE IQYSCPAAEG 1020 NQSPSLLGIN IGNNSNIVPS PSTAENQKAT PGVQSLSVEK HSSVQDLCTG PDNPQIQTFA 1080 QYSKRSRSQL KSYIFHIAEE MCAYRSLPLG QDRRRNRYWQ FVASASSNDP GSGRIFVEFL 1140 DGNWRLIDTE EAFDALLNSL DSRGVRESHL RLMLQKVEGS FKENVHNNTQ CSKAGSRGET 1200 CVKNEADETD SSPDRHTGSD SPSSTLCGLN SDSLETSSSF KIELGKSESD KKSALRRYQD 1260 FQKWTWKECY NSSILCAMKY GKKRCKPQVV VCDICLNPYF YEDSHCSCCH RTFPSNNGFN 1320 FSKHAFQCGD KLSKEICILD SSLPLRTRLL KALLAYIEVS IPPEAFQSTW IEDIRRHWSV 1380 KLSKTSSVEE LLQILALLER ALKRDFLSST FSTTGEQLGL NTMSESAAQT SADPESVAVL 1440 PWVPLTTSAV SLRLFEFDES IVYVLHEKPE PREEKEDRQY IKLPSRHSAS KSIKVSETAD 1500 MGRDEFMKVK SNTVKIVQSN NKRGRGSALK GRSKSISKTK QNNGRRHSAK VAGNLNQRVK 1560 QQGGGSQGQA GGRGRRTVRK RRMGKKAVED LLLGHRGASR NNNIARESLR NLDEDWDDQK 1620 GSPMTPIHMG TANISNSTEE AESDDNVQAM ESDDNVQAVE SDDNGQAVES DDNGQAMESD 1680 DNGQAVESDD NGQAVEYDQG NWEIGFNGNP SRWQGDLVGT SDEDVEASED DNHNDNGIEE 1740 NEEEDSEGDV MSEGSDGTAN RIVNEEESSD SDVSEDSSD*

Sequence ? help Back to Top

Protein Sequence Length: 1780 aa Download sequence Send to blast

MEGEACSEGE NNRKRGGTDD DSNENNNNND SNHGISSKIV NSNEGQSKPK RQMKTPFQLE  60
TLEKAYAVDN YPSETMRGEL SEKLGLSDRQ LQMWFCHRRL KDKKDLTSKK VPRKVVAEPL  120
PESPTDDPML SPPELGNEYG SGSGSGSSPY ARVEPLNIVP RGVPGYYESP RAMMESRAIA  180
CVEAQLGEPL REDGPILGVE FDPLPPDAFG APLATEQQKL PSFAYDSKIY ERHDSRANKA  240
MARTFRDYRS LPTQAGTRSD TSGPFSKSHL HDAMEGPARN LHLALGNETV PRIRPSQGQF  300
RARLLSQQDK QLIPYQSPTR DDNAAPTREL DPTILNVGTS SHFADHQIVV PENLHAQPSG  360
QVLHNNNAIR IEKKRKSDDV RDVEAHEMKI RKEIEKQDNL RRKNEERMRK EIEKQDRERK  420
KEEERLMRER QREEEKAEKM KIREELRKEK EAERRKAALE KATARRIAKE SMELIEDEHL  480
EMMELAASSK GFSSIIHLDF DTLQHIESFR DSLCVFPPKS VKLRKPFAIK PWINSEKNVG  540
NLLMVWRFLI TFADVLELWS FTLDEFVQAF HDYDSRLLGE IHVALLKVVI KDIEDVARTP  600
STGLGSNQNG AANAGGGHPE IVEGAYAWGF DIRNWHKHLN LLTWPEIFRQ LALSAGYGPQ  660
LKKRSATCSY ANNKDEGRSC EDIISKLRNG SAAENAVAKM HERGLLAPRR SRHRLTPGTV  720
KFAAFHVLSL EGDKGLTVLE LAEKIQKSGL RDLTTSKTPE ASISVALTRD TKLFERIAPS  780
TYCVRQAFRK NPADAESILS EARKKIQIFE NGFLAEEDTD DVEREESESD EIDEDPEVDD  840
LVNSSSANKT SEPCDDFSSN GKENLGHDVG LQGEFDKDLP HFPESSSKKV DTPIAVTGRK  900
PGACEVLNVG NLGEDNMEID ESKPGESWVQ GLAEGEYSDL SVEERLSALV VLVGVANEGN  960
SIRVVLEDRL EAANALKKQM WAEAQLDKFR LKDDIFSKSD FPSLNGNKVE IQYSCPAAEG  1020
NQSPSLLGIN IGNNSNIVPS PSTAENQKAT PGVQSLSVEK HSSVQDLCTG PDNPQIQTFA  1080
QYSKRSRSQL KSYIFHIAEE MCAYRSLPLG QDRRRNRYWQ FVASASSNDP GSGRIFVEFL  1140
DGNWRLIDTE EAFDALLNSL DSRGVRESHL RLMLQKVEGS FKENVHNNTQ CSKAGSRGET  1200
CVKNEADETD SSPDRHTGSD SPSSTLCGLN SDSLETSSSF KIELGKSESD KKSALRRYQD  1260
FQKWTWKECY NSSILCAMKY GKKRCKPQVV VCDICLNPYF YEDSHCSCCH RTFPSNNGFN  1320
FSKHAFQCGD KLSKEICILD SSLPLRTRLL KALLAYIEVS IPPEAFQSTW IEDIRRHWSV  1380
KLSKTSSVEE LLQILALLER ALKRDFLSST FSTTGEQLGL NTMSESAAQT SADPESVAVL  1440
PWVPLTTSAV SLRLFEFDES IVYVLHEKPE PREEKEDRQY IKLPSRHSAS KSIKVSETAD  1500
MGRDEFMKVK SNTVKIVQSN NKRGRGSALK GRSKSISKTK QNNGRRHSAK VAGNLNQRVK  1560
QQGGGSQGQA GGRGRRTVRK RRMGKKAVED LLLGHRGASR NNNIARESLR NLDEDWDDQK  1620
GSPMTPIHMG TANISNSTEE AESDDNVQAM ESDDNVQAVE SDDNGQAVES DDNGQAMESD  1680
DNGQAVESDD NGQAVEYDQG NWEIGFNGNP SRWQGDLVGT SDEDVEASED DNHNDNGIEE  1740
NEEEDSEGDV MSEGSDGTAN RIVNEEESSD SDVSEDSSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	104	RRLKDKKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g09110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017437418.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like
TrEMBL	A0A0S3QZA6	0.0	A0A0S3QZA6_PHAAN; Uncharacterized protein
STRING	XP_007159367.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1