PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g09110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 1780aa    MW: 198710 Da    PI: 5.1488
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g09110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1849104257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      kR+  t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk
  Vang02g09110.1  49 PKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKK 104
                     69****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-1829104IPR009057Homeodomain-like
SuperFamilySSF466898.13E-1734104IPR009057Homeodomain-like
PROSITE profilePS5007116.64945105IPR001356Homeobox domain
SMARTSM003895.6E-1847109IPR001356Homeobox domain
PfamPF000463.1E-1649104IPR001356Homeobox domain
CDDcd000863.41E-1450104No hitNo description
SMARTSM005714.5E-20536595IPR018501DDT domain
PROSITE profilePS5082716.1536595IPR018501DDT domain
PfamPF027913.3E-16538592IPR018501DDT domain
PfamPF050662.7E-16718786IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156123.8E-9925967IPR028942WHIM1 domain
PfamPF156138.0E-1311051177IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1780 aa     Download sequence    Send to blast
MEGEACSEGE NNRKRGGTDD DSNENNNNND SNHGISSKIV NSNEGQSKPK RQMKTPFQLE  60
TLEKAYAVDN YPSETMRGEL SEKLGLSDRQ LQMWFCHRRL KDKKDLTSKK VPRKVVAEPL  120
PESPTDDPML SPPELGNEYG SGSGSGSSPY ARVEPLNIVP RGVPGYYESP RAMMESRAIA  180
CVEAQLGEPL REDGPILGVE FDPLPPDAFG APLATEQQKL PSFAYDSKIY ERHDSRANKA  240
MARTFRDYRS LPTQAGTRSD TSGPFSKSHL HDAMEGPARN LHLALGNETV PRIRPSQGQF  300
RARLLSQQDK QLIPYQSPTR DDNAAPTREL DPTILNVGTS SHFADHQIVV PENLHAQPSG  360
QVLHNNNAIR IEKKRKSDDV RDVEAHEMKI RKEIEKQDNL RRKNEERMRK EIEKQDRERK  420
KEEERLMRER QREEEKAEKM KIREELRKEK EAERRKAALE KATARRIAKE SMELIEDEHL  480
EMMELAASSK GFSSIIHLDF DTLQHIESFR DSLCVFPPKS VKLRKPFAIK PWINSEKNVG  540
NLLMVWRFLI TFADVLELWS FTLDEFVQAF HDYDSRLLGE IHVALLKVVI KDIEDVARTP  600
STGLGSNQNG AANAGGGHPE IVEGAYAWGF DIRNWHKHLN LLTWPEIFRQ LALSAGYGPQ  660
LKKRSATCSY ANNKDEGRSC EDIISKLRNG SAAENAVAKM HERGLLAPRR SRHRLTPGTV  720
KFAAFHVLSL EGDKGLTVLE LAEKIQKSGL RDLTTSKTPE ASISVALTRD TKLFERIAPS  780
TYCVRQAFRK NPADAESILS EARKKIQIFE NGFLAEEDTD DVEREESESD EIDEDPEVDD  840
LVNSSSANKT SEPCDDFSSN GKENLGHDVG LQGEFDKDLP HFPESSSKKV DTPIAVTGRK  900
PGACEVLNVG NLGEDNMEID ESKPGESWVQ GLAEGEYSDL SVEERLSALV VLVGVANEGN  960
SIRVVLEDRL EAANALKKQM WAEAQLDKFR LKDDIFSKSD FPSLNGNKVE IQYSCPAAEG  1020
NQSPSLLGIN IGNNSNIVPS PSTAENQKAT PGVQSLSVEK HSSVQDLCTG PDNPQIQTFA  1080
QYSKRSRSQL KSYIFHIAEE MCAYRSLPLG QDRRRNRYWQ FVASASSNDP GSGRIFVEFL  1140
DGNWRLIDTE EAFDALLNSL DSRGVRESHL RLMLQKVEGS FKENVHNNTQ CSKAGSRGET  1200
CVKNEADETD SSPDRHTGSD SPSSTLCGLN SDSLETSSSF KIELGKSESD KKSALRRYQD  1260
FQKWTWKECY NSSILCAMKY GKKRCKPQVV VCDICLNPYF YEDSHCSCCH RTFPSNNGFN  1320
FSKHAFQCGD KLSKEICILD SSLPLRTRLL KALLAYIEVS IPPEAFQSTW IEDIRRHWSV  1380
KLSKTSSVEE LLQILALLER ALKRDFLSST FSTTGEQLGL NTMSESAAQT SADPESVAVL  1440
PWVPLTTSAV SLRLFEFDES IVYVLHEKPE PREEKEDRQY IKLPSRHSAS KSIKVSETAD  1500
MGRDEFMKVK SNTVKIVQSN NKRGRGSALK GRSKSISKTK QNNGRRHSAK VAGNLNQRVK  1560
QQGGGSQGQA GGRGRRTVRK RRMGKKAVED LLLGHRGASR NNNIARESLR NLDEDWDDQK  1620
GSPMTPIHMG TANISNSTEE AESDDNVQAM ESDDNVQAVE SDDNGQAVES DDNGQAMESD  1680
DNGQAVESDD NGQAVEYDQG NWEIGFNGNP SRWQGDLVGT SDEDVEASED DNHNDNGIEE  1740
NEEEDSEGDV MSEGSDGTAN RIVNEEESSD SDVSEDSSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197104RRLKDKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g09110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437418.10.0PREDICTED: homeobox-DDT domain protein RLT1-like
TrEMBLA0A0S3QZA60.0A0A0S3QZA6_PHAAN; Uncharacterized protein
STRINGXP_007159367.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1