PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g09110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HB-other | ||||||||
Protein Properties | Length: 1780aa MW: 198710 Da PI: 5.1488 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 49 | 104 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk Vang02g09110.1 49 PKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKK 104 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 29 | 104 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.13E-17 | 34 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 45 | 105 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-18 | 47 | 109 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-16 | 49 | 104 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.41E-14 | 50 | 104 | No hit | No description |
SMART | SM00571 | 4.5E-20 | 536 | 595 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.1 | 536 | 595 | IPR018501 | DDT domain |
Pfam | PF02791 | 3.3E-16 | 538 | 592 | IPR018501 | DDT domain |
Pfam | PF05066 | 2.7E-16 | 718 | 786 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 3.8E-9 | 925 | 967 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 8.0E-13 | 1105 | 1177 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1780 aa Download sequence Send to blast |
MEGEACSEGE NNRKRGGTDD DSNENNNNND SNHGISSKIV NSNEGQSKPK RQMKTPFQLE 60 TLEKAYAVDN YPSETMRGEL SEKLGLSDRQ LQMWFCHRRL KDKKDLTSKK VPRKVVAEPL 120 PESPTDDPML SPPELGNEYG SGSGSGSSPY ARVEPLNIVP RGVPGYYESP RAMMESRAIA 180 CVEAQLGEPL REDGPILGVE FDPLPPDAFG APLATEQQKL PSFAYDSKIY ERHDSRANKA 240 MARTFRDYRS LPTQAGTRSD TSGPFSKSHL HDAMEGPARN LHLALGNETV PRIRPSQGQF 300 RARLLSQQDK QLIPYQSPTR DDNAAPTREL DPTILNVGTS SHFADHQIVV PENLHAQPSG 360 QVLHNNNAIR IEKKRKSDDV RDVEAHEMKI RKEIEKQDNL RRKNEERMRK EIEKQDRERK 420 KEEERLMRER QREEEKAEKM KIREELRKEK EAERRKAALE KATARRIAKE SMELIEDEHL 480 EMMELAASSK GFSSIIHLDF DTLQHIESFR DSLCVFPPKS VKLRKPFAIK PWINSEKNVG 540 NLLMVWRFLI TFADVLELWS FTLDEFVQAF HDYDSRLLGE IHVALLKVVI KDIEDVARTP 600 STGLGSNQNG AANAGGGHPE IVEGAYAWGF DIRNWHKHLN LLTWPEIFRQ LALSAGYGPQ 660 LKKRSATCSY ANNKDEGRSC EDIISKLRNG SAAENAVAKM HERGLLAPRR SRHRLTPGTV 720 KFAAFHVLSL EGDKGLTVLE LAEKIQKSGL RDLTTSKTPE ASISVALTRD TKLFERIAPS 780 TYCVRQAFRK NPADAESILS EARKKIQIFE NGFLAEEDTD DVEREESESD EIDEDPEVDD 840 LVNSSSANKT SEPCDDFSSN GKENLGHDVG LQGEFDKDLP HFPESSSKKV DTPIAVTGRK 900 PGACEVLNVG NLGEDNMEID ESKPGESWVQ GLAEGEYSDL SVEERLSALV VLVGVANEGN 960 SIRVVLEDRL EAANALKKQM WAEAQLDKFR LKDDIFSKSD FPSLNGNKVE IQYSCPAAEG 1020 NQSPSLLGIN IGNNSNIVPS PSTAENQKAT PGVQSLSVEK HSSVQDLCTG PDNPQIQTFA 1080 QYSKRSRSQL KSYIFHIAEE MCAYRSLPLG QDRRRNRYWQ FVASASSNDP GSGRIFVEFL 1140 DGNWRLIDTE EAFDALLNSL DSRGVRESHL RLMLQKVEGS FKENVHNNTQ CSKAGSRGET 1200 CVKNEADETD SSPDRHTGSD SPSSTLCGLN SDSLETSSSF KIELGKSESD KKSALRRYQD 1260 FQKWTWKECY NSSILCAMKY GKKRCKPQVV VCDICLNPYF YEDSHCSCCH RTFPSNNGFN 1320 FSKHAFQCGD KLSKEICILD SSLPLRTRLL KALLAYIEVS IPPEAFQSTW IEDIRRHWSV 1380 KLSKTSSVEE LLQILALLER ALKRDFLSST FSTTGEQLGL NTMSESAAQT SADPESVAVL 1440 PWVPLTTSAV SLRLFEFDES IVYVLHEKPE PREEKEDRQY IKLPSRHSAS KSIKVSETAD 1500 MGRDEFMKVK SNTVKIVQSN NKRGRGSALK GRSKSISKTK QNNGRRHSAK VAGNLNQRVK 1560 QQGGGSQGQA GGRGRRTVRK RRMGKKAVED LLLGHRGASR NNNIARESLR NLDEDWDDQK 1620 GSPMTPIHMG TANISNSTEE AESDDNVQAM ESDDNVQAVE SDDNGQAVES DDNGQAMESD 1680 DNGQAVESDD NGQAVEYDQG NWEIGFNGNP SRWQGDLVGT SDEDVEASED DNHNDNGIEE 1740 NEEEDSEGDV MSEGSDGTAN RIVNEEESSD SDVSEDSSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 104 | RRLKDKKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g09110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017437418.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1-like | ||||
TrEMBL | A0A0S3QZA6 | 0.0 | A0A0S3QZA6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159367.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2523 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |