PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g07350.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 273aa MW: 29520 Da PI: 7.8452

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g07350.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	70.8	3.5e-22	6	59	77	129
NAM 77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 at++gyWkatgkd+e++s+ + +lvg+kktLvfy+grapkgek++Wvmheyrle Vang02g07350.1 6 ATEAGYWKATGKDREIYSSkTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 59 799************9745567**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	30.273	1	83	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-25	5	83	IPR003441	NAC domain
Pfam	PF02365	1.6E-10	6	58	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGASWATEAG YWKATGKDRE IYSSKTCSLV GMKKTLVFYR GRAPKGEKSN WVMHEYRLEG 60 KFAYHYLSRS SKDEWVISRV FQKNNTGGAS TVSAAAATGS SKKTRMSTSN TSSNMSLCPE 120 PGSPCSIYLP PLLESSPYAT SGSAAATFND RENYSFESAA ATANQREHVS CFSTMSTDAA 180 AFNHLAPPPE PPLDPFSRFH RNNIGVSAFP CLRSLHDNLN LPFFFPPVVH GGSDVANFTA 240 IANLPAPEDP RVADGSSGMP IVPSELDCMW GY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-15	9	86	95	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-15	9	86	95	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-15	9	86	95	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-15	9	86	95	168	NO APICAL MERISTEM PROTEIN
3swm_A	5e-15	9	86	98	171	NAC domain-containing protein 19
3swm_B	5e-15	9	86	98	171	NAC domain-containing protein 19
3swm_C	5e-15	9	86	98	171	NAC domain-containing protein 19
3swm_D	5e-15	9	86	98	171	NAC domain-containing protein 19
3swp_A	5e-15	9	86	98	171	NAC domain-containing protein 19
3swp_B	5e-15	9	86	98	171	NAC domain-containing protein 19
3swp_C	5e-15	9	86	98	171	NAC domain-containing protein 19
3swp_D	5e-15	9	86	98	171	NAC domain-containing protein 19
4dul_A	4e-15	9	86	95	168	NAC domain-containing protein 19
4dul_B	4e-15	9	86	95	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g07350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017432814.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
TrEMBL	A0A0S3S9R6	0.0	A0A0S3S9R6_PHAAN; Uncharacterized protein
STRING	XP_007133204.1	1e-164	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3689	34	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	2e-51	NAC family protein