PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g07170.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

M-type_MADS

Protein Properties

Length: 70aa MW: 8305.85 Da PI: 10.8311

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g07170.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74	1.2e-23	9	60	1	51
S---SHHHHHHHHHHHHHHHHHHH.HHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKA.eELSvLCdaevaviifsstgklyeyss 51 kri+nk+nrqv f+kRrn +l KA +ELSv Cdaeva+iif ++gklye+ss Vang02g07170.1 9 KRIKNKINRQVIFAKRRNALLNKAyYELSVFCDAEVALIIFFNRGKLYEFSS 60 79********************55**********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-27	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.651	1	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-22	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-17	10	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-18	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MGRGRVELKR IKNKINRQVI FAKRRNALLN KAYYELSVFC DAEVALIIFF NRGKLYEFSS 60 TLRYMYIHK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-15	1	61	1	60	MEF2 CHIMERA
6byy_B	1e-15	1	61	1	60	MEF2 CHIMERA
6byy_C	1e-15	1	61	1	60	MEF2 CHIMERA
6byy_D	1e-15	1	61	1	60	MEF2 CHIMERA
6bz1_A	1e-15	1	61	1	60	MEF2 CHIMERA
6bz1_B	1e-15	1	61	1	60	MEF2 CHIMERA
6bz1_C	1e-15	1	61	1	60	MEF2 CHIMERA
6bz1_D	1e-15	1	61	1	60	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor active in inflorescence development and floral organogenesis. {ECO:0000250}.
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g07170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-111	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622386.1	6e-29	PREDICTED: MADS-box protein CMB1-like
Refseq	XP_027922084.1	6e-29	MADS-box protein EJ2-like
Swissprot	Q42464	1e-27	AGL9_SOLLC; Agamous-like MADS-box protein AGL9 homolog
Swissprot	Q8LLR0	1e-27	MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBL	A0A151SPN8	8e-30	A0A151SPN8_CAJCA; Agamous-like MADS-box protein AGL9 isogeny
STRING	POPTR_0004s11450.1	7e-29	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	4e-30	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]