PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g06660.3
Common NameLR48_Vigan08g019400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 164aa    MW: 18419.5 Da    PI: 6.5155
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g06660.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.22.4e-122342456
                    S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++  e++ +LA++lg++ rqV +W+qN+Ra++k
  Vang02g06660.3  2 KLEPEQKFHLANQLGVPPRQVAIWYQNKRARWK 34
                    5778999*************************9 PP
2HD-ZIP_I/II85.28.9e-282722393
     HD-ZIP_I/II 23 kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                    kLepe+K +la++Lg+ prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L+++lk+
  Vang02g06660.3  2 KLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKADLKK 72
                    8******************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.71136IPR001356Homeobox domain
CDDcd000861.55E-8137No hitNo description
Gene3DG3DSA:1.10.10.602.4E-11240IPR009057Homeodomain-like
PfamPF000461.0E-9234IPR001356Homeobox domain
SuperFamilySSF466891.8E-10344IPR009057Homeodomain-like
PROSITE patternPS0002701134IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKLEPEQKFH LANQLGVPPR QVAIWYQNKR ARWKTQSLEV DHGVLQAKLE NVMAEKKQLE  60
KDVERLKADL KKAQEMLLIG DVVKGGKNSN YNNGNNNKNN NNNNNNNNGS CCEFSTSFEE  120
GGSSGVVLDD HECWQSGEVM QVEELYAYFM GANYGSGLHE KRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g06660.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027908723.16e-94homeobox-leucine zipper protein ATHB-52
TrEMBLA0A0L9V3651e-116A0A0L9V365_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S9P61e-116A0A0S3S9P6_PHAAN; Uncharacterized protein
STRINGXP_007133162.12e-88(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-24homeobox protein 52
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]