PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 190aa MW: 21689.3 Da PI: 7.1804

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g06660.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.3e-20	21	74	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t+eq+++Le++F++n+++ e++ +LA++lg++ rqV +W+qN+Ra++k Vang02g06660.1 21 NKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWK 74 56789************************************************9 PP
2	HD-ZIP_I/II	112.5	2.8e-36	21	112	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqv++LE++F ++ kLepe+K +la++Lg+ prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L+++lk+ Vang02g06660.1 21 NKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKADLKK 112 79*************9999*****************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.71E-18	13	77	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-18	14	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.261	16	76	IPR001356	Homeobox domain
SMART	SM00389	4.5E-17	18	80	IPR001356	Homeobox domain
CDD	cd00086	1.44E-15	19	77	No hit	No description
Pfam	PF00046	3.0E-17	21	74	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	51	74	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MGDLFFSFKT QEHGHQRAKH NKKRLTEEQV TILEKCFASN MKLEPEQKFH LANQLGVPPR 60 QVAIWYQNKR ARWKTQSLEV DHGVLQAKLE NVMAEKKQLE KDVERLKADL KKAQEMLLIG 120 NNNKNNNNNN NNNNGSCCEF STSFEEGGSS GVVLDDHECW QSGEVMQVEE LYAYFMGANY 180 GSGLHEKRA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g06660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014493595.1	1e-119	homeobox-leucine zipper protein ATHB-52
Refseq	XP_027908723.1	1e-118	homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A0L9V365	1e-121	A0A0L9V365_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3S9P6	1e-121	A0A0S3S9P6_PHAAN; Uncharacterized protein
STRING	XP_007133162.1	1e-113	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-36	homeobox protein 52

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]