PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g05230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Nin-like
Protein Properties Length: 825aa    MW: 91417.3 Da    PI: 6.9806
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g05230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.43.3e-29504555152
          RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     aek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++
  Vang02g05230.1 504 AEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 555
                     589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.245492575IPR003035RWP-RK domain
PfamPF020423.7E-25508555IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MSESKEENPD FLPKSKPQEE HGFAMDFDIG FESNTKAVIE NPVENYDNKK YVSPSLVAVP  60
PSENSDGYCL IKERMTQALR HFKELTEQNV LAQVWAPVRN GNRYALTTSG QPFVLDPHSN  120
GLHQYRTVSL RYMFSVDGEN DEILGLPGRV FQQKIPEWTP NVQYYSSKEY QRLNHAQHYN  180
VRGTLALPVF EPAGHSCVAV LELIMTAPKI NYAPEVDKIC KALEHALAEI LEILTIVCET  240
HSLPLAQTWV PCKHRSVLAH GGGHKKSCSS FDGCCMGQVC MSITEVAFYV IDAHTWGFHE  300
ACVEHHLQQG QGVAGRAFLS HNMCFCGNIT QFCKTEYPLV HYALMFGLTS SFAVCLQSSH  360
TGNDEYVIEF FLPPRITEFN EQKTLLRSIL ATMKPHFQSL KIAAGVELEQ NCSIEIIEPR  420
KERVHLWFES IPITQSSMSP PRHASPSMGE RLPLEPSEQQ ITTDFDDIND GRNLGDNTDG  480
HIDQNTSLEP RTKKKPSERK RGKAEKSISL DVLQHYFTGS LKDAAKSLGV CPTTMKRICR  540
QHGISRWPSR KIKKVNRSLS KLKCVIESVH GAEGAFGLNS LSNGSLPIAA GSFSEPSTSN  600
KFNCQTSLTI RPSEPKINEQ DFDASRASEK NRQAGLEAHF LSTRTQNPEK AINEKVVAVQ  660
EIGTKGTTRF RTGSGSSEES ANPSPHGSCQ GSPPNEMSPP KDIFVTGTSE QCLVLRGSLG  720
STLHSTSTPN RATANPMPNF VETTEPQEPF GGQLLEGVAR GIGNLVSNGY LNEPVCSCPS  780
IATQTYLVLN PCAFTEQLCS LSYQKNSSRL LCQKRKEIHD QPFH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g05230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440564.10.0PREDICTED: protein NLP6-like isoform X2
SwissprotQ8RWY40.0NLP6_ARATH; Protein NLP6
TrEMBLA0A0L9VK630.0A0A0L9VK63_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TB350.0A0A0S3TB35_PHAAN; Uncharacterized protein
STRINGXP_007152252.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42573456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.10.0Nin-like family protein
Publications ? help Back to Top
  1. Liseron-Monfils C, et al.
    Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs.
    Plant Signal Behav, 2014.
    [PMID:24270626]
  2. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  3. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]