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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g05230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Nin-like | ||||||||
Protein Properties | Length: 825aa MW: 91417.3 Da PI: 6.9806 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.4 | 3.3e-29 | 504 | 555 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Vang02g05230.1 504 AEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 555 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.245 | 492 | 575 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.7E-25 | 508 | 555 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 825 aa Download sequence Send to blast |
MSESKEENPD FLPKSKPQEE HGFAMDFDIG FESNTKAVIE NPVENYDNKK YVSPSLVAVP 60 PSENSDGYCL IKERMTQALR HFKELTEQNV LAQVWAPVRN GNRYALTTSG QPFVLDPHSN 120 GLHQYRTVSL RYMFSVDGEN DEILGLPGRV FQQKIPEWTP NVQYYSSKEY QRLNHAQHYN 180 VRGTLALPVF EPAGHSCVAV LELIMTAPKI NYAPEVDKIC KALEHALAEI LEILTIVCET 240 HSLPLAQTWV PCKHRSVLAH GGGHKKSCSS FDGCCMGQVC MSITEVAFYV IDAHTWGFHE 300 ACVEHHLQQG QGVAGRAFLS HNMCFCGNIT QFCKTEYPLV HYALMFGLTS SFAVCLQSSH 360 TGNDEYVIEF FLPPRITEFN EQKTLLRSIL ATMKPHFQSL KIAAGVELEQ NCSIEIIEPR 420 KERVHLWFES IPITQSSMSP PRHASPSMGE RLPLEPSEQQ ITTDFDDIND GRNLGDNTDG 480 HIDQNTSLEP RTKKKPSERK RGKAEKSISL DVLQHYFTGS LKDAAKSLGV CPTTMKRICR 540 QHGISRWPSR KIKKVNRSLS KLKCVIESVH GAEGAFGLNS LSNGSLPIAA GSFSEPSTSN 600 KFNCQTSLTI RPSEPKINEQ DFDASRASEK NRQAGLEAHF LSTRTQNPEK AINEKVVAVQ 660 EIGTKGTTRF RTGSGSSEES ANPSPHGSCQ GSPPNEMSPP KDIFVTGTSE QCLVLRGSLG 720 STLHSTSTPN RATANPMPNF VETTEPQEPF GGQLLEGVAR GIGNLVSNGY LNEPVCSCPS 780 IATQTYLVLN PCAFTEQLCS LSYQKNSSRL LCQKRKEIHD QPFH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g05230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017440564.1 | 0.0 | PREDICTED: protein NLP6-like isoform X2 | ||||
Swissprot | Q8RWY4 | 0.0 | NLP6_ARATH; Protein NLP6 | ||||
TrEMBL | A0A0L9VK63 | 0.0 | A0A0L9VK63_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3TB35 | 0.0 | A0A0S3TB35_PHAAN; Uncharacterized protein | ||||
STRING | XP_007152252.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4257 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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