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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g04570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HB-other | ||||||||
Protein Properties | Length: 165aa MW: 18596.5 Da PI: 11 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.3 | 3.6e-05 | 72 | 97 | 29 | 54 |
HHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRak 54 ++++L +++gL+ +q+ +WF N+R + Vang02g04570.1 72 DKAKLVEETGLQLKQINNWFINQRKR 97 678999******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 1.07E-5 | 70 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-13 | 70 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.843 | 70 | 101 | IPR001356 | Homeobox domain |
Pfam | PF05920 | 1.5E-10 | 70 | 97 | IPR008422 | Homeobox KN domain |
SuperFamily | SSF46689 | 1.07E-7 | 71 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
RRRSDLANWK PHHRQTIVAF YLTGIAVSSL PFFLRFSDLV RGVLLLLLHS SKSGSLGGGS 60 NQALSHLHLE DDKAKLVEET GLQLKQINNW FINQRKRNWH NNLERAYLLA ITEVLESFPL 120 TFSIAKGIPV PSQVLVEAKR IAESRIPPKI TYKNTSGSSK EKKR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g04570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-110 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 3e-18 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |