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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g03590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 977aa MW: 109635 Da PI: 7.0361 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.5 | 1.9e-09 | 225 | 280 | 21 | 76 |
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 + rgk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e+ Vang02g03590.1 225 ITRGKTRADKDKEVAEFLKRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQI 280 45789999999**************************************9965544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.510.10 | 1.6E-8 | 837 | 958 | No hit | No description |
SuperFamily | SSF56112 | 3.42E-17 | 837 | 958 | IPR011009 | Protein kinase-like domain |
CDD | cd00180 | 8.17E-12 | 839 | 959 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 977 aa Download sequence Send to blast |
MFAFACCDPL YFVTFPFEDM AEVPSSIYQG NKRIQNPFEN MPIHHHQQLS PVVVVTGAPP 60 FISSPLYVSS GASSSPYEPQ FETLNPKRPR YSGQWKQLLP SPPAQPKQSQ MAMLPTTESS 120 PSPTTHTSPN PQQPQTQTAS SSDTSSSPTH SLPLLSGGSG QEGSKQEGEQ VHQQLRKGKY 180 VSPVWKPNEM LWLARAWKEQ YQGGGGGGSE SSSRAEQQHQ AELGITRGKT RADKDKEVAE 240 FLKRHGVNRD AKTAGTKWDN MLGEFRKVYE WERGGEREQI GKSYFRLSPY ERKLHRLPAS 300 FDEDVFEELA QFMGSRMRSS QGRAGSSFVS GDEARTALAA ARALPPPPRP FKDDETPLSG 360 TTKQLAITSG VEPFFHGSRG GLLGLDTLVD VSGSSSSSKE LRRIGKIRMT WEESVSLWAE 420 EGEIHRGRVR LQSSSFLNAD ELTCFDEAMV PCPMEYFEDG PLKGFSVDRF VLLKESNFPP 480 KHFPLDRIII FCVGVAAIAT LDFRDPTEYY MECLLRASPQ TLPSLYELRR HLQEPPPEDL 540 RFPLRRDVYE ELPQGKELFF TTTPEPLDCR TIMYDIVGPI IRIHNPSLSL AASSSRDSFI 600 PLWDECINRV IQKFCPEELT LIRKPTSPPP ESTNQSMLQD QWPNVTGFVN NYSLWRGEET 660 HQLKESQPNP STTLVGKLMW TYMDLPYILG YYAVANTVTF CALSRSQDGI INRTDLHEVN 720 LTTPVEKLKA LVPCFRIGLL LALLSKRCAS ISNCKGFTYS DFERVCYGNG VVTEVTPSTC 780 TRVFMEKRKW MAVKEVYEIL DHRIPHAEVL VGFSERELGL SFKPRGCRVK PGNCEELVEA 840 LKFVTKAMVA LHDLSFMHRD LKWEKVMRRR DREEWFVCGF DEAAGAPELK GHVSGTRGGH 900 APEMERGLHG VKVDVWGVGN LIRTCGLGGV PKMLRELQNR CMEQNPEQRP TAADCYHHLL 960 QLQSSLSAAA GGVMMM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g03590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438089.1 | 0.0 | PREDICTED: uncharacterized protein LOC108344133 | ||||
TrEMBL | A0A0L9VJ25 | 0.0 | A0A0L9VJ25_PHAAN; Uncharacterized protein | ||||
STRING | XP_007152366.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11857 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-08 | Trihelix family protein |