PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g01940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 1227aa MW: 137035 Da PI: 4.8185 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35 | 2.6e-11 | 106 | 166 | 27 | 85 |
---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 27 ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 +++ +++++++++d+ g ++e+ l+ + + yvl +GW +F++++gL +gD v ++ Vang02g01940.1 106 EEDVRKGIEVKVYDRGGHEFEMMLKKwvIDSN-QfYVLNRGWFSFCNEHGLGQGDLVALRAF 166 44556899****************66343444.35**********************98844 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-11 | 102 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-12 | 106 | 179 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.8E-9 | 108 | 167 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.23E-12 | 110 | 182 | No hit | No description |
PROSITE profile | PS50863 | 9.516 | 114 | 184 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF81606 | 4.05E-52 | 251 | 418 | IPR001932 | PPM-type phosphatase domain |
Gene3D | G3DSA:3.60.40.10 | 1.0E-66 | 253 | 554 | IPR001932 | PPM-type phosphatase domain |
SMART | SM00332 | 4.9E-56 | 259 | 551 | IPR001932 | PPM-type phosphatase domain |
PROSITE profile | PS51746 | 41.019 | 263 | 553 | IPR001932 | PPM-type phosphatase domain |
CDD | cd00143 | 4.62E-55 | 279 | 553 | No hit | No description |
Pfam | PF00481 | 1.4E-33 | 293 | 532 | IPR001932 | PPM-type phosphatase domain |
PROSITE pattern | PS01032 | 0 | 299 | 307 | IPR000222 | PPM-type phosphatase, divalent cation binding |
SuperFamily | SSF81606 | 4.05E-52 | 450 | 555 | IPR001932 | PPM-type phosphatase domain |
SuperFamily | SSF51206 | 3.27E-26 | 616 | 737 | IPR018490 | Cyclic nucleotide-binding-like |
Gene3D | G3DSA:2.60.120.10 | 1.3E-29 | 617 | 738 | IPR014710 | RmlC-like jelly roll fold |
CDD | cd00038 | 5.56E-21 | 627 | 736 | No hit | No description |
SMART | SM00100 | 1.0E-12 | 627 | 750 | IPR000595 | Cyclic nucleotide-binding domain |
PROSITE profile | PS50042 | 26.86 | 627 | 736 | IPR000595 | Cyclic nucleotide-binding domain |
Pfam | PF00027 | 3.9E-20 | 646 | 737 | IPR000595 | Cyclic nucleotide-binding domain |
PRINTS | PR00103 | 1.3E-7 | 648 | 662 | No hit | No description |
PRINTS | PR00103 | 1.3E-7 | 663 | 677 | No hit | No description |
PRINTS | PR00103 | 1.3E-7 | 698 | 707 | No hit | No description |
SuperFamily | SSF51206 | 1.01E-14 | 744 | 803 | IPR018490 | Cyclic nucleotide-binding-like |
Gene3D | G3DSA:2.60.120.10 | 6.5E-16 | 746 | 882 | IPR014710 | RmlC-like jelly roll fold |
SMART | SM00100 | 4.9E-5 | 753 | 891 | IPR000595 | Cyclic nucleotide-binding domain |
PROSITE profile | PS50042 | 12.038 | 753 | 893 | IPR000595 | Cyclic nucleotide-binding domain |
CDD | cd00038 | 9.43E-9 | 753 | 877 | No hit | No description |
SuperFamily | SSF51206 | 1.01E-14 | 830 | 888 | IPR018490 | Cyclic nucleotide-binding-like |
PRINTS | PR00103 | 1.3E-7 | 872 | 884 | No hit | No description |
SuperFamily | SSF56112 | 2.45E-42 | 899 | 1202 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 1.2E-7 | 907 | 1020 | No hit | No description |
PROSITE profile | PS50011 | 25.418 | 914 | 1168 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 2.2E-17 | 922 | 1168 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 5.5E-32 | 934 | 1168 | IPR000719 | Protein kinase domain |
Gene3D | G3DSA:1.10.510.10 | 2.6E-40 | 1021 | 1190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0006470 | Biological Process | protein dephosphorylation | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0004721 | Molecular Function | phosphoprotein phosphatase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1227 aa Download sequence Send to blast |
MAGSSSNSGR AKSVVEGNKH AKEIQFNDEL HLEFILDAGI VKDCELSLPY GVQLTNDKWN 60 LFLPLLGFEE TLIGFLREEE NVRKGIEVKV YDKGCHEYEM MLLKEEEDVR KGIEVKVYDR 120 GGHEFEMMLK KWVIDSNQFY VLNRGWFSFC NEHGLGQGDL VALRAFRHSI TDMLCFVVTF 180 RRMRGSSING DPIARTTDVG EVANFSPTSS DVEEGEIRDQ LNQLSITRDS EAGIRRLARV 240 SAQFLPPDGS RIVKVPSENF ELRYSFLSQR GYYPDALDKA NQDSFCIHTP FGTSPNDHFF 300 GVFDGHGEFG AQCSQFVKRK LCENLLRNSK FRGDPVEACH AAFLATNSQL HADVLDDSMS 360 GTTAITVLVR GRTIFVANSG DSRAVIAERR GKEIVAVDLS IDQTPFRSDE LERVKLCGAR 420 VLTLDQIEGL KNPDVQCWGT EEGDDGDPPR LWVPNGMYPG TAFTRSIGDS IAETIGVVAN 480 PEIVVFELTQ DHPFFVLASD GVFEFLSSQS VVEMAAKFKD PRDACAAIVA ESYRLWLQYE 540 TRTDDITVII VHVNGLTAES TVAQSASYGD VLRKPVPQVV EVTGSESPST FGWSARNHRF 600 NDFEPLLVLH LHMPQAHIEQ ALHDHFLFRK LTDSQCHVLL DCMQRVEVEP GDIIVKQGGE 660 GDCFYVVGSG EFEVLATQEE KEGDVPRVLQ RYTAEKLSCF GELALMYNKP LQASVRAVTK 720 GTLWALKRED FRGILMSEFS NLSSLKLLRS VDLLSRLSIL QLSQISDSLS EVSFSNGQTI 780 IDNNEILALY IIQKGCVKIT FDSDLLTSPN AYSLKPDIQN EENDVQSRTE LSIEKPEGSY 840 FGEWTLYGER IGSINAVAVG DVVCALLTKD KFESVIGSIQ KISQEDHKSK DNSMELTGRN 900 YDFSSLDKVQ LSDLEWRKTL YSTDCSEIGV ANLKESENLL TLKRFSKPKI KRLGKESQVL 960 KEKDLIKGLG SSVSIPQVLC TCADRMYAGI LLNTHLACPL SSILSSPFSE SAARFCAASV 1020 VTALEDLHKN GVLYRGVSPD VLMLEQTGQI QLVDFRFGKQ LSGERTFTIC GMADSLAPEI 1080 VLGKGHGFPA DWWALGVLIY FMLRGEMPFG SWRENELDTV AKIAKRKLHL PESFSSETVD 1140 LISKLLEVEE NNRLGSQGPD SVKSHPWFKG IDWEGIRSRT FPVPQEIISR ITQYLEVHSE 1200 DCSTVYPGSP LQEVEELNVP EWLENW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rdq_E | 2e-41 | 899 | 1184 | 28 | 313 | cAMP-dependent protein kinase, alpha-catalytic subunit |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g01940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439799.1 | 0.0 | PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 | ||||
Swissprot | Q9SL76 | 0.0 | P2C19_ARATH; Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein | ||||
TrEMBL | A0A4D6LVL4 | 0.0 | A0A4D6LVL4_VIGUN; Protein kinase A | ||||
STRING | XP_007152897.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10863 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12020.2 | 7e-10 | WRKY family protein |
Publications ? help Back to Top | |||
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