PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g00600.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 1031aa    MW: 113377 Da    PI: 7.1115
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g00600.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22135236199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  Vang02g00600.2 135 FCKQLTASDTSTHGGFSVPRRAAEKIfphldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 226
                     99*****************************9545444.38************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  Vang02g00600.2 227 QQLLLGIRRA 236
                     889****997 PP
2Auxin_resp118.45.7e-39261344183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ k++  ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Vang02g00600.2 261 AAHAAANSSPFTVFYNPRASPSEFVIPLAKYYKSVCsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344
                     79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-42125264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-40127250IPR015300DNA-binding pseudobarrel domain
CDDcd100174.01E-18134226No hitNo description
PfamPF023622.1E-20135236IPR003340B3 DNA binding domain
SMARTSM010199.1E-22135237IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843135237IPR003340B3 DNA binding domain
PfamPF065078.5E-34261344IPR010525Auxin response factor
PROSITE profilePS5174519.0079161002IPR000270PB1 domain
SuperFamilySSF542779.81E-6939996No hitNo description
PfamPF023093.0E-69661003IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MKTHPPQPDG GSAAPNPNPS QESRSINPEL WQACAGPLVN LPPSATHVIY FPQGHSEQVA  60
ASLKKDVDAQ IPNYPNLPSK LLCVLHNLTL HVSSSLSLSL VFASPLINFI IFRLIPKQMK  120
SDLALKSTKP QPDFFCKQLT ASDTSTHGGF SVPRRAAEKI FPHLDYSMQP PAQELVARDL  180
HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP  240
TNISSSVLSS DSMHIGILAA AAHAAANSSP FTVFYNPRAS PSEFVIPLAK YYKSVCSHQP  300
SLGMRFRMMF ETEDSGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGEKRSRVS  360
IWEIEPVTAP FFLCPPPFFR SKRPRQPGMP DDDLSDFDNI FKRTMPWLGD EMCMKDPQGL  420
PGLSLAQWMN VQQHPALASS LQPNFAPSLP GSILQNIPGA DISRQLGFSA PQISQSNNVA  480
FNTHRLLQTA QQLDQLQKLP STSSTLGAVL PPQQQLGDIS QQSRQNLANQ TIPQSQVQAQ  540
LLHPQNIVQT NNILQQQQPS IQNHQMHRSL SQNPSQQQTI IGQSQQQNLI QSPIPDHVQQ  600
LQMSDNQIQL HLLQKLQQQK QTHLAQQTVL QQPTQLTQIQ DQQRQILDKT HNLSRALTPG  660
QVLEIPPMLQ NSLPEANSIS NQITKANFQN SIQFPQQPKL QQQQPGLLSG MSGHMGLLPT  720
PTTNNQLSAA GSSILNGAAG AGQSVITDDI PSCSTSPSAN NCASALPPLI NSRLQRNTIV  780
GDDMAQSAST ILSSSALETM SSNANLLKDL QPKSEVKPSL NISKSQNQGL FGLQSYLNGS  840
AVHTDCLDTS SSTTSVCLSQ SDAHMHQNNN PLAYNPHPML FRDNSQDGEV QADARGNIPY  900
ANNIDSQMGM PLNPDSLLTK GTLGLGKDLS NNFSSEALLG YEELKQDLAR RFGIEGQLED  960
RQRIGWKLVY VDHESDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSLDG DFGNGGLPNQ  1020
ACSSSDGGNT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1522636551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g00600.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439702.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0S3TCW70.0A0A0S3TCW7_PHAAN; Auxin response factor
STRINGXP_007152995.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19