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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g00420.1 | ||||||||
Common Name | LR48_Vigan10g002600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 242aa MW: 26139.2 Da PI: 6.8634 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.2e-08 | 101 | 130 | 3 | 32 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg 32 +WT+eE+ ++ + ++lG+g+W+ I+r Vang02g00420.1 101 PWTEEEHRTFLVGLEKLGKGDWRGISRNYV 130 8*************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 4.9E-4 | 3 | 20 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.532 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
SuperFamily | SSF46689 | 6.01E-7 | 96 | 132 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-8 | 97 | 131 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.3E-8 | 98 | 129 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-6 | 101 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.32E-6 | 101 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRKCSHCGN IGHNSRTCSS FRATFVGVRL FGVQLHISNS SSLTMKKSFS MDSLPLLSSP 60 SSSFSSSRIS IDDHPEKASV GYLSDSDGLI VRPQDRKKGV PWTEEEHRTF LVGLEKLGKG 120 DWRGISRNYV GGSSNCKSDD LVSPTKSKGE IENDVTLSLL QAQETKTGEQ KDSDDCCQDE 180 AGADHEAVMW LHPQMKSSSN NSSAAIPDLE LTLSVSKDKA KTMEQTKSTP GSFFLGPISV 240 T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g00420.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439230.1 | 1e-152 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q7XC57 | 7e-32 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A0L9VHF9 | 1e-151 | A0A0L9VHF9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3TDH3 | 1e-151 | A0A0S3TDH3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007152917.1 | 1e-119 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3213 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 1e-34 | MYB_related family protein |
Publications ? help Back to Top | |||
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