PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0273s00020.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 812aa MW: 89086.2 Da PI: 6.388 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Vang0273s00020.2 24 RERWTEEEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.59E-16 | 18 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.913 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-15 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 812 aa Download sequence Send to blast |
MDAYSSGEEV VVKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KIADSRAKWY RGLDKPYLGK WLSGADGGGF LFQEHILEEI HGLIDHHDKS 120 AVPTLGTGKF RDTLEKEALV KGVPIGQALD IDIPPPRPKR KPSNPYPRKT RIGTATLHSG 180 AKDGKINLVE FSHDNQALDL EKEPVPEIYD LDEGPTTVKE NKDENCSKVF TDIQEVPCSS 240 LSSANRSSIS MSVPLGNSCV FKETTTSVKE VITPDDKTES FLTVELENGN LEINGGKQAN 300 GTSKNSTLEN SDALLMKLVQ NEKTDGLDSA LTIEGMQGNN QNYPRHVTVH VVDGNLGTCT 360 QNPSQDMLFR DCMFQPIGGA NGQPNLFTNS APSNTRESQN NTARSSAHQS FLPYPPFTQH 420 NQDDYQSFLH MSSTFSNLIV STLLQNPAAH AAASFAATFW PYANPETSAD SPRCSQGGFT 480 SRHIGSPPSV VAIAAATVAA ATAWWAAHGL LPLCAPLHTA FACPPASVTA VPSMNTSETP 540 SLKAEQEKST LQNPPLHDQM MHPEYSEAPQ AQHSASKSLA VISSDSESGD VKLNTSPKAT 600 DHETNEIISE HLDSNKTKGR KQVDRSSCGS NTASSSDVET DALGKDEKGK EEPETPDANH 660 LAIEFSNRRR SICNLTDSWK EVSEEGKLAF QALFSREVLP QSFSPPHALT NKDQMGITND 720 NQQTIDDRNE DLESKKCSSI YKPMQKNPPF VENNVGLLTL GLGQGKLKTR RTGFKPYKRC 780 SMEAKENRVG ASNQGEEKCC KRIRLEGDTS T* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0273s00020.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017442031.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442032.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442033.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442034.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442035.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442036.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442037.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442038.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442039.1 | 0.0 | PREDICTED: protein LHY-like | ||||
TrEMBL | A0A0L9VQJ2 | 0.0 | A0A0L9VQJ2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA07G05410.6 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-101 | MYB_related family protein |