PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0262s00190.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 177aa    MW: 20460.7 Da    PI: 8.5817
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0262s00190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.93.2e-135692990
              FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90
                      +++ f+C +   ++++k ++++++r+r+++r++C akl ++k++   ++kw+v+ +e+ HnH+l 
  Vang0262s00190.1  5 IEESFTCHRACVAKPKKISEVENQRKRKSSRCNCSAKLLISKRTfgfEEKWMVICFENSHNHALL 69
                      6789***************9***********************9999***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-10569IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
LKIYIEESFT CHRACVAKPK KISEVENQRK RKSSRCNCSA KLLISKRTFG FEEKWMVICF  60
ENSHNHALLD EKEIRFLPAY RDIPINDQAR ILLLLSKVGC SVSLIMRVLE AEKGIEARYL  120
PFLDKDIRNF IQSQSSVGKE NDVSNVLKLY KGLKDKDDAF QYDFTLDESN KLEHII*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732QRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0262s00190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431847.12e-97PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A1S3UKG56e-94A0A1S3UKG5_VIGRR; protein FAR1-RELATED SEQUENCE 11-like
STRINGAES987361e-69(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-39FAR1-related sequence 11