PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0255s00050.1
Common NameLR48_Vigan11g123200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 336aa    MW: 35757.8 Da    PI: 8.5635
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0255s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.91.8e-3773132362
            zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg r+nk+s+
  Vang0255s00050.1  73 EVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGFRRNKRSK 132
                       5679*****************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3256124IPR003851Zinc finger, Dof-type
PfamPF027013.9E-3275130IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.92976130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVFTSIPASY FDASNWQQQQ PNNQPGGSDS NSQQLLQPPP PPLPVAMQSH GEGSIRPGSM  60
ADRARMANMP MPEVALKCPR CESTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRSVP  120
VGGGFRRNKR SKGTGGSGGG SNSPATSDRQ TGSANSTNSG SSKSERIGLA PQIPPFRFMP  180
PLHQLGDFGD GDISLNYGLS YGPVGGVGDL GYQIGTSALG GGATSIFSAP GLDQWRMPQQ  240
FPLLASLEGS SPASNLYPFE GSAEMSGYIR PKVSTSGIMA QIASVKMEER KEPDLSTLFL  300
GNDNPVNEQY WTSASSASWT DICGISSSFT ASNHL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0255s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441875.10.0PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBLA0A0L9VTD20.0A0A0L9VTD2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SWB50.0A0A0S3SWB5_PHAAN; Uncharacterized protein
STRINGXP_007134031.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.14e-54OBF-binding protein 3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]