PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0255s00050.1

Common Name

LR48_Vigan11g123200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 336aa MW: 35757.8 Da PI: 8.5635

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0255s00050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.9	1.8e-37	73	132	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg r+nk+s+ Vang0255s00050.1 73 EVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGFRRNKRSK 132 5679*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-32	56	124	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	75	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MVFTSIPASY FDASNWQQQQ PNNQPGGSDS NSQQLLQPPP PPLPVAMQSH GEGSIRPGSM 60 ADRARMANMP MPEVALKCPR CESTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRSVP 120 VGGGFRRNKR SKGTGGSGGG SNSPATSDRQ TGSANSTNSG SSKSERIGLA PQIPPFRFMP 180 PLHQLGDFGD GDISLNYGLS YGPVGGVGDL GYQIGTSALG GGATSIFSAP GLDQWRMPQQ 240 FPLLASLEGS SPASNLYPFE GSAEMSGYIR PKVSTSGIMA QIASVKMEER KEPDLSTLFL 300 GNDNPVNEQY WTSASSASWT DICGISSSFT ASNHL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00407	DAP	Transfer from AT3G55370	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0255s00050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017441875.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A0L9VTD2	0.0	A0A0L9VTD2_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SWB5	0.0	A0A0S3SWB5_PHAAN; Uncharacterized protein
STRING	XP_007134031.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	4e-54	OBF-binding protein 3

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]