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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0255s00050.1 | ||||||||
Common Name | LR48_Vigan11g123200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 336aa MW: 35757.8 Da PI: 8.5635 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.9 | 1.8e-37 | 73 | 132 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg r+nk+s+ Vang0255s00050.1 73 EVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGFRRNKRSK 132 5679*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-32 | 56 | 124 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.9E-32 | 75 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.929 | 76 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 78 | 114 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MVFTSIPASY FDASNWQQQQ PNNQPGGSDS NSQQLLQPPP PPLPVAMQSH GEGSIRPGSM 60 ADRARMANMP MPEVALKCPR CESTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRSVP 120 VGGGFRRNKR SKGTGGSGGG SNSPATSDRQ TGSANSTNSG SSKSERIGLA PQIPPFRFMP 180 PLHQLGDFGD GDISLNYGLS YGPVGGVGDL GYQIGTSALG GGATSIFSAP GLDQWRMPQQ 240 FPLLASLEGS SPASNLYPFE GSAEMSGYIR PKVSTSGIMA QIASVKMEER KEPDLSTLFL 300 GNDNPVNEQY WTSASSASWT DICGISSSFT ASNHL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0255s00050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441875.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.1-like | ||||
TrEMBL | A0A0L9VTD2 | 0.0 | A0A0L9VTD2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SWB5 | 0.0 | A0A0S3SWB5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134031.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 4e-54 | OBF-binding protein 3 |
Publications ? help Back to Top | |||
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