PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0238s00200.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 447aa    MW: 49690.1 Da    PI: 7.7239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0238s00200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12268314354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Vang0238s00200.1 268 MNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYINEL 314
                       5899***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-3034181IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.53E-17265327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.901265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-13268319No hitNo description
PfamPF000106.2E-10269314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15269327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MTRERDTRSA SERVLPLPAS ARAEPGKSRS FLMWASHDDN GNLFLSFGEG HFQGTKETSP  60
KFSIPLSTKK FPKTPTTENI NDAEWFYVMS LTRTFPVNNS SSSTSTTPSS LLGKSFALGS  120
VLWLNSKHEL QFYKCERSNE AQLHGIQTLI SIPTQNGVIE MGSYDSIKQN WNLVHHVKSL  180
FQPLPDPLPV QLLNDHTISF ADIGVVAGTQ ETKKRKQTQT PPNNQKDSYV DSEHSDSDCP  240
TLPTTSTPTA SEPKKRGRKP VLGRDTPMNH VEAERQRREK LNHRFYALRA VVPNVSRMDK  300
ASLLSDAVAY INELKAKIEY LESQQQREGN KRVKTEMMDT MDNQSTATTS TIVDQGRPGP  360
GGPCPFGLEI DVKIVGPDAM VRVQSENANH PGARLMGALR DLEFQVHHAS MSCVNDLMLQ  420
DVVINVPDGM RSEESLKSAI LMRLDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-26262342183Transcription factor MYC2
5gnj_B3e-26262342183Transcription factor MYC2
5gnj_E3e-26262342183Transcription factor MYC2
5gnj_F3e-26262342183Transcription factor MYC2
5gnj_G3e-26262342183Transcription factor MYC2
5gnj_I3e-26262342183Transcription factor MYC2
5gnj_M3e-26262342183Transcription factor MYC2
5gnj_N3e-26262342183Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0238s00200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441588.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A0L9VR060.0A0A0L9VR06_PHAAN; Uncharacterized protein
STRINGXP_007135301.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-56bHLH family protein