PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0229s00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 122aa MW: 12847.4 Da PI: 7.8992 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.6e-15 | 35 | 79 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c+ +++ Vang0229s00170.1 35 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSCRYSYYS 79 79******************************.********87776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.428 | 30 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.33E-14 | 31 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-17 | 32 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-12 | 34 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 35 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.74E-14 | 37 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MEPEETAATA VDGSGDEGLL LLEGSDVGGG KDRVKGPWSP EEDAILSRLV SKFGARNWSL 60 IARGISGRSG KSCRYSYYSL TDAVPVSING YKVSAILDIV GKCGCCSRNF SRNGSTLREK 120 P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0229s00170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-120 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515157.1 | 9e-44 | transcription factor MYB1 | ||||
Refseq | XP_017442242.1 | 9e-44 | PREDICTED: transcriptional activator Myb isoform X1 | ||||
TrEMBL | A0A0S3SWF3 | 2e-42 | A0A0S3SWF3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3VAC1 | 2e-42 | A0A1S3VAC1_VIGRR; transcription factor MYB1 | ||||
STRING | XP_007134782.1 | 7e-32 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20092 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-18 | myb domain protein 109 |