PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0228s00230.1
Common NameLR48_Vigan267s000300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 319aa    MW: 35370.4 Da    PI: 6.4372
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0228s00230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.8e-28161221259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqKe+ gs++prsYYrCt++   +C++kk v+r +++ +++e+tY+g+H+++
  Vang0228s00230.1 161 EDGFTWRKYGQKEILGSKYPRSYYRCTHQklyECQAKKMVQRLDHNANIFEVTYRGKHTCH 221
                       7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-27156222IPR003657WRKY domain
SuperFamilySSF1182905.62E-25157222IPR003657WRKY domain
SMARTSM007741.3E-36160222IPR003657WRKY domain
PROSITE profilePS5081120.277161223IPR003657WRKY domain
PfamPF031061.8E-25161221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEEVINSIRR ASELVQNLQQ DLPNLANQPE TLSLSIDQIT QAFTAAKEQL LLISRHTQTS  60
ESPPMLLHET TPHQPQMDAT LIQEWLRSSH TVTMDQLFQM QLASMAAREV EDSERTMGSE  120
GDQGQGIHAS SSRPRRREAN QEKKKILVPA PQFGNTEMPP EDGFTWRKYG QKEILGSKYP  180
RSYYRCTHQK LYECQAKKMV QRLDHNANIF EVTYRGKHTC HMSSTAPSSV PPQHLLLDIT  240
QNTNTISSQL SPSVNLSLHP ASGAAATTSG RAGPSTSRYG ADYPVVDMAD AMFNSGSSSG  300
NNSMEFIFSP TEDKSDAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-16161220968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0228s00230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027902770.10.0WRKY transcription factor 55 isoform X3
TrEMBLA0A0L9T7430.0A0A0L9T743_PHAAN; Uncharacterized protein
STRINGXP_007136416.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-56WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]