PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0221s00310.1

Common Name

LR48_Vigan04g163800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 301aa MW: 33431 Da PI: 5.5756

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0221s00310.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.6e-38	40	95	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC stntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rkn++ Vang0221s00310.1 40 PNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRG 95 58***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	31	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.77	40	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MFPHTLITAA ALQHMLQHHH HFPTPMEQRS RWKPNIEVAP NCPRCASTNT KFCYYNNYSL 60 SQPRYFCKAC RRYWTKGGSL RNVPVGGGCR KNRRGKSSSR HNQTQRSFIS ASSYDTESSP 120 EDAHRNNNGS REIDMALVFA KFLNPKQNVG EDNNASSSSN NYFTPPGVQT ENDIAGVQSP 180 NKGLSSDPVI VDSDAVVAIE NFGREELSLG EIDELEKLLG VSGDEDGLWC DATLSSSVTW 240 EAPVKEMQLQ ELEYSMPLNE NDAQLLPITS ASTLHSMSDT CWSTWSSFDL SAMEMFSSTP 300 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0221s00310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017421279.1	0.0	PREDICTED: dof zinc finger protein DOF3.5
TrEMBL	A0A0L9UEY4	0.0	A0A0L9UEY4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RDW9	0.0	A0A0S3RDW9_PHAAN; Uncharacterized protein
STRING	XP_007137553.1	1e-173	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-45	Dof family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]