PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0221s00310.1
Common NameLR48_Vigan04g163800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 301aa    MW: 33431 Da    PI: 5.5756
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0221s00310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.46.6e-384095661
            zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                       +cprC stntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rkn++ 
  Vang0221s00310.1 40 PNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRG 95
                      58***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-283194IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.774094IPR003851Zinc finger, Dof-type
PfamPF027012.5E-324094IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104278IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MFPHTLITAA ALQHMLQHHH HFPTPMEQRS RWKPNIEVAP NCPRCASTNT KFCYYNNYSL  60
SQPRYFCKAC RRYWTKGGSL RNVPVGGGCR KNRRGKSSSR HNQTQRSFIS ASSYDTESSP  120
EDAHRNNNGS REIDMALVFA KFLNPKQNVG EDNNASSSSN NYFTPPGVQT ENDIAGVQSP  180
NKGLSSDPVI VDSDAVVAIE NFGREELSLG EIDELEKLLG VSGDEDGLWC DATLSSSVTW  240
EAPVKEMQLQ ELEYSMPLNE NDAQLLPITS ASTLHSMSDT CWSTWSSFDL SAMEMFSSTP  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0221s00310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421279.10.0PREDICTED: dof zinc finger protein DOF3.5
TrEMBLA0A0L9UEY40.0A0A0L9UEY4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RDW90.0A0A0S3RDW9_PHAAN; Uncharacterized protein
STRINGXP_007137553.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-45Dof family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]