PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 444aa MW: 48115 Da PI: 7.6475

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0216s00450.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.1e-39	75	134	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Vang0216s00450.1 75 PDKILRCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 134 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	66	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.0E-32	77	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.444	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
LEELSFKVCN TITINMSQTE KDPGIRLFGR KIPVPECQIP ANSGPTENEP IVNPKPAEDN 60 TENGGSDQDK VLKKPDKILR CPRCNSLDTK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR 120 NVPIGAGRRK NKHLASQYRH IIVSSNGIPA SRLETEDASG FQHVTNLESS VPFRSSADSS 180 TVLKFGPDTT LCESMDSMLN LRDDRRCVDA SSINRAEYAG EPSLCGSSVT NNSTQGNELS 240 EHKTSNWLQC YPVPPWVLTY PGWNNVSSVE AVHQSSAPMC SPYNTGPAAM QWCPTAMVAI 300 PGMCPPSIPF QVVPPSCWSG TTHWNAGTGT VSIGSNACLS PSSSTSNSCC SGNGSPTLGK 360 HARDTVFADE EKSDKCVLVP KTIRTDASNE ASKCPIRAAL SIKPDQQKKI EPKEGKDRVL 420 GASQILEANP AAISRAHAFQ ESI*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

LEELSFKVCN TITINMSQTE KDPGIRLFGR KIPVPECQIP ANSGPTENEP IVNPKPAEDN  60
TENGGSDQDK VLKKPDKILR CPRCNSLDTK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR  120
NVPIGAGRRK NKHLASQYRH IIVSSNGIPA SRLETEDASG FQHVTNLESS VPFRSSADSS  180
TVLKFGPDTT LCESMDSMLN LRDDRRCVDA SSINRAEYAG EPSLCGSSVT NNSTQGNELS  240
EHKTSNWLQC YPVPPWVLTY PGWNNVSSVE AVHQSSAPMC SPYNTGPAAM QWCPTAMVAI  300
PGMCPPSIPF QVVPPSCWSG TTHWNAGTGT VSIGSNACLS PSSSTSNSCC SGNGSPTLGK  360
HARDTVFADE EKSDKCVLVP KTIRTDASNE ASKCPIRAAL SIKPDQQKKI EPKEGKDRVL  420
GASQILEANP AAISRAHAFQ ESI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0216s00450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017416000.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A0L9U7L4	0.0	A0A0L9U7L4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RWT8	0.0	A0A0S3RWT8_PHAAN; Uncharacterized protein
STRING	XP_007161893.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-60	cycling DOF factor 2

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]