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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vang0216s00440.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
WOX |
| Protein Properties |
Length: 219aa MW: 23879.2 Da PI: 6.008 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang0216s00440.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 17.8 | 5.6e-06 | 23 | 57 | 2 | 35 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAk 35
r+R+t+++eq+ +Le+ F++ +p ++e ++ k
Vang0216s00440.1 23 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRK 57
89*****************9899999999888766 PP
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| 2 | Wus_type_Homeobox | 60.2 | 4.7e-20 | 22 | 67 | 2 | 47 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkied 47
+r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G++++
Vang0216s00440.1 22 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGG 67
589****************************************987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MEDERQKEAK SPRHGPEKSE AVRSRWTPKP EQILILESIF NSGMVNPPKD ETVRIRKLLE 60
KFGAVGGSSS SCSGGGQQGM GGFFSGSSPQ MGFPEIIDHT PPSPSVLFPP FDPNLTFQTG 120
YGGTDISAFI TVFINGIATE LPKGPIDMKT VFGEDVMLVH SSGVPILAND FGFLMQNLQH 180
GESYFLVGRI FKSIASFPNH FQFLVYSFTL NNITLPIF*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}. |
| UniProt | Transcription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015037 | 1e-167 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
