PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0203s00250.1
Common NameLR48_Vigan10g077000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 298aa    MW: 33845 Da    PI: 7.9902
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0203s00250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.7e-152370148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd +l + + ++G g+W++++ + g+ R +k+c++rw +yl
  Vang0203s00250.1 23 KGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 70
                      678*******************************************97 PP
2Myb_DNA-binding52.21.4e-1676121148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg +++ E++ +  ++++lG++ W+ Ia++++ gRt++++k++w++yl
  Vang0203s00250.1  76 RGVFSKHEEDTIMALHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 121
                       899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-221773IPR009057Homeodomain-like
PROSITE profilePS5129416.6581870IPR017930Myb domain
SuperFamilySSF466893.56E-2821117IPR009057Homeodomain-like
SMARTSM007176.2E-112272IPR001005SANT/Myb domain
PfamPF002493.2E-132370IPR001005SANT/Myb domain
CDDcd001671.66E-92670No hitNo description
PROSITE profilePS5129425.11971125IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2574125IPR009057Homeodomain-like
SMARTSM007176.6E-1575123IPR001005SANT/Myb domain
PfamPF002494.9E-1576121IPR001005SANT/Myb domain
CDDcd001679.44E-1079121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
LTKKERGKME KQPLEKAKPK YRKGLWSPEE DNKLRNHILK HGHGCWSSVP IKAGLQRNGK  60
SCRLRWINYL RPGLKRGVFS KHEEDTIMAL HHMLGNKWSQ IAQHLPGRTD NEIKNYWHSY  120
LKKKVMKTKE MESDKQIEHA SSSSDTVENS LSPQKLATQD PSHALLQNME KTATHSDNFF  180
SQNYDFSKEA CQSSLPKLLF SEWLSEDQVN GAGSVNSDDS LVLGNVFDQN SSFQEAIMHL  240
LEGNFGEEYH NSLIHSSTTE VYNSQLKPSN QVDGSDFIHC IPGNDLCSNF SLINRAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-231912523128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0203s00250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439523.10.0PREDICTED: transcription factor LAF1
SwissprotQ9M0K42e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0L9VIR10.0A0A0L9VIR1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TBJ90.0A0A0S3TBJ9_PHAAN; Uncharacterized protein
STRINGGLYMA16G31280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.17e-63myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]