PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g19300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 908aa MW: 101063 Da PI: 8.3381 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.2 | 2e-15 | 21 | 97 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p f+ +++g + +s +l+ +sg++W+v l k+++ ++ GW++Fv +++L+ gD +vF+++g+ f +v+vf+k Vang01g19300.1 21 KIPDGFVCRMEGRTYGS--FSLTGPSGNVWTVHL--LKQDNDLFFHHGWSSFVVDHRLECGDLLVFRYEGHLHF--TVQVFDK 97 57777777777777665..8899***********..********************************987666..9999997 PP | |||||||
2 | B3 | 46.5 | 6.6e-15 | 246 | 337 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + ++++ +v+ s l +p +f +h ++++++++l +++g+ W+v+ ++ +++l +GW Fv+ n++k gD+++F+l+++ e +v+ Vang01g19300.1 246 VRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVNECEL--RVH 336 56667777888899*******98996..46999***************954566666799***********************9986555..554 PP E CS B3 96 v 96 + Vang01g19300.1 337 I 337 4 PP | |||||||
3 | B3 | 35.6 | 1.7e-11 | 445 | 504 | 28 | 86 |
--..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 28 gkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 + ++ +++++l++++g+ W+v+ + k+++ +++ +GW Fv++n+++ gD+++F+l+ Vang01g19300.1 445 HLPTYKTEVILRNSRGECWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVT 504 33455679***************77666666799***********************875 PP | |||||||
4 | B3 | 56.5 | 5.1e-18 | 510 | 585 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 lpk+f ++ ++k++ +tl+ +sg W+v + ++++ +++ GW++Fvk++ Lke+Df+vFk++g+s+f v vf+ Vang01g19300.1 510 ALPKTFSDNLKKKPPA--NVTLKGPSGVAWNVGI--ITSGDTLYFACGWEQFVKDHCLKENDFLVFKYNGESQF--DVLVFD 585 79****9666766554..7***************..999999****************************9999..777776 PP | |||||||
5 | B3 | 42.7 | 1e-13 | 782 | 870 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v+ ps+v k+ +++p+k + eh ++ s++++l+ + +W +++y + + + lt+GWk+Fv +n+L+e D++vFk g+++ +lv+ Vang01g19300.1 782 VVMRPSHVYKRFFVSMPNKWIGEHI--PPMSQDVILRM-DKGEWVARYSYHNIRHTGGLTGGWKHFVLDNNLEEYDVCVFKPAGQMNDNLVL 870 5789*****************9995..44666898887.5669*******88888888***********************88887666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 3.2E-7 | 6 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.85E-15 | 14 | 96 | No hit | No description |
SuperFamily | SSF101936 | 5.89E-19 | 21 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-17 | 21 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-12 | 21 | 97 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.576 | 22 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-21 | 236 | 338 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-23 | 238 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.25E-19 | 243 | 337 | No hit | No description |
SMART | SM01019 | 1.3E-10 | 245 | 343 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-11 | 245 | 337 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.788 | 245 | 341 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-12 | 443 | 508 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.43E-9 | 444 | 503 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-12 | 444 | 508 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.8E-8 | 445 | 504 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.452 | 494 | 587 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-10 | 500 | 587 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.33E-18 | 503 | 585 | No hit | No description |
SuperFamily | SSF101936 | 6.67E-19 | 508 | 585 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-19 | 509 | 585 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-14 | 509 | 583 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-18 | 778 | 876 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-17 | 779 | 876 | No hit | No description |
SMART | SM01019 | 1.1E-11 | 780 | 878 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-16 | 780 | 864 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.405 | 780 | 878 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-12 | 781 | 870 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 908 aa Download sequence Send to blast |
LVLGSTETAS FPWTKFARAH KIPDGFVCRM EGRTYGSFSL TGPSGNVWTV HLLKQDNDLF 60 FHHGWSSFVV DHRLECGDLL VFRYEGHLHF TVQVFDKDGC EKEAAFMSEC SQSSSDFEEI 120 VGQKRDVKES SSLDIAFDGV AKKRRGCKYE NREHEPGFVG KELLRYEVVR PIRMFRETEE 180 TSKACLANDS LVPFHMDHRN EEAAILYRNG KEDGHYFLGG VSLSNVSAQD EKKVAQSFTS 240 KFPYFVRIMK SFNVSGSYTL NIPYQFSMAH LPNCKIKIIL HNLKGEHWTV NSVPTTRVHT 300 SHTLCGGWMA FVRGNNIKIG DICIFELVNE CELRVHIAGV GKDGLEDDQV GRVNAGHAGT 360 TRYMPMNAKV NSKSIRKVDL SDKKWPKIGQ ETVLSIDLKK SGRASNTSKK MGLCPQSKAA 420 HKKLATPRRH RVEDELSSQA KSAAHLPTYK TEVILRNSRG ECWTVNSVPD AKGRTVHTFC 480 GGWMAFVRDN DINFGDTCIF ELVTQCEMQA LPKTFSDNLK KKPPANVTLK GPSGVAWNVG 540 IITSGDTLYF ACGWEQFVKD HCLKENDFLV FKYNGESQFD VLVFDGGSLC EKASSYFVRK 600 CGHTEAEDVG GSLNKKRDNA EDPMKEGHIP LKAGVQCASP GKSVHANGTK EPINVPFETP 660 TPSEEAFNAD VESAGAEQIT SDGVPLSAVP KETVNGKRIR KLASVVKHVQ TKRRGRGRPA 720 KVSTVIERAL DWVSGLDAEP VSAVRSAAQE AFISNRRPVT DDEIKNALAL AQAGRTDDSL 780 VVVMRPSHVY KRFFVSMPNK WIGEHIPPMS QDVILRMDKG EWVARYSYHN IRHTGGLTGG 840 WKHFVLDNNL EEYDVCVFKP AGQMNDNLVL DMSIFRVVEE IVPLSVMSPT GKRGRKPAAQ 900 NAILTET* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g19300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421534.1 | 0.0 | PREDICTED: B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A4D6MC15 | 0.0 | A0A4D6MC15_VIGUN; Uncharacterized protein | ||||
STRING | XP_007160811.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-32 | B3 family protein |